Last updated on 2025-08-21 07:50:10 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.2.0 | 140.34 | 550.52 | 690.86 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.2.0 | 84.23 | 374.01 | 458.24 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.2.0 | 1126.13 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.2.0 | 1117.10 | ERROR | |||
| r-devel-windows-x86_64 | 2.2.0 | 146.00 | 545.00 | 691.00 | ERROR | |
| r-patched-linux-x86_64 | 2.2.0 | 134.36 | 539.70 | 674.06 | OK | |
| r-release-linux-x86_64 | 2.2.0 | 126.84 | 540.64 | 667.48 | OK | |
| r-release-macos-arm64 | 2.2.0 | 187.00 | OK | |||
| r-release-macos-x86_64 | 2.2.0 | 390.00 | OK | |||
| r-release-windows-x86_64 | 2.2.0 | 149.00 | 611.00 | 760.00 | OK | |
| r-oldrel-macos-arm64 | 2.2.0 | 219.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.2.0 | 433.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 2.2.0 | 181.00 | 794.00 | 975.00 | OK |
Version: 2.2.0
Check: examples
Result: ERROR
Running examples in ‘rliger-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read10XH5
> ### Title: Read 10X HDF5 file
> ### Aliases: read10XH5 read10XH5Mem read10XH5Delay
>
> ### ** Examples
>
> matrix <- read10XH5(
+ filename = system.file("extdata/ctrl.h5", package = "rliger"),
+ inMemory = TRUE
+ )
> class(matrix) # Should show dgCMatrix
[1] "dgCMatrix"
attr(,"package")
[1] "Matrix"
> if (requireNamespace("HDF5Array", quietly = TRUE)) {
+ matrix <- read10XH5(
+ filename = system.file("extdata/ctrl.h5", package = "rliger"),
+ inMemory = FALSE
+ )
+ print(class(matrix)) # Should show TENxMatrix
+ }
Failed with error: ‘unused argument (quitely = TRUE)’
Error in `read10XH5Delay()`:
✖ Package HDF5Array is required for reading 10X H5 data into
DelayedArray.
ℹ Please install with `BiocManager::install('HDF5Array')`.
Backtrace:
▆
1. └─rliger::read10XH5(...)
2. └─rliger::read10XH5Delay(filename, useNames, featureMakeUniq)
3. └─cli::cli_abort(...)
4. └─rlang::abort(...)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plotPairwiseDEGHeatmap 7.427 0.114 9.074
createLiger 6.472 0.391 8.343
plotClusterFactorDot 4.486 0.370 5.478
plotClusterGeneViolin 4.231 0.271 5.561
plotMarkerHeatmap 4.168 0.185 5.433
plotVolcano 3.953 0.085 5.468
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.2.0
Check: examples
Result: ERROR
Running examples in ‘rliger-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read10XH5
> ### Title: Read 10X HDF5 file
> ### Aliases: read10XH5 read10XH5Mem read10XH5Delay
>
> ### ** Examples
>
> matrix <- read10XH5(
+ filename = system.file("extdata/ctrl.h5", package = "rliger"),
+ inMemory = TRUE
+ )
> class(matrix) # Should show dgCMatrix
[1] "dgCMatrix"
attr(,"package")
[1] "Matrix"
> if (requireNamespace("HDF5Array", quietly = TRUE)) {
+ matrix <- read10XH5(
+ filename = system.file("extdata/ctrl.h5", package = "rliger"),
+ inMemory = FALSE
+ )
+ print(class(matrix)) # Should show TENxMatrix
+ }
Failed with error: ‘unused argument (quitely = TRUE)’
Error in `read10XH5Delay()`:
✖ Package HDF5Array is required for reading 10X H5 data into
DelayedArray.
ℹ Please install with `BiocManager::install('HDF5Array')`.
Backtrace:
▆
1. └─rliger::read10XH5(...)
2. └─rliger::read10XH5Delay(filename, useNames, featureMakeUniq)
3. └─cli::cli_abort(...)
4. └─rlang::abort(...)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plotPairwiseDEGHeatmap 6.262 0.389 8.526
createLiger 4.309 0.387 5.701
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.2.0
Check: examples
Result: ERROR
Running examples in ‘rliger-Ex.R’ failed
The error most likely occurred in:
> ### Name: read10XH5
> ### Title: Read 10X HDF5 file
> ### Aliases: read10XH5 read10XH5Mem read10XH5Delay
>
> ### ** Examples
>
> matrix <- read10XH5(
+ filename = system.file("extdata/ctrl.h5", package = "rliger"),
+ inMemory = TRUE
+ )
> class(matrix) # Should show dgCMatrix
[1] "dgCMatrix"
attr(,"package")
[1] "Matrix"
> if (requireNamespace("HDF5Array", quietly = TRUE)) {
+ matrix <- read10XH5(
+ filename = system.file("extdata/ctrl.h5", package = "rliger"),
+ inMemory = FALSE
+ )
+ print(class(matrix)) # Should show TENxMatrix
+ }
Failed with error: ‘unused argument (quitely = TRUE)’
Error in `read10XH5Delay()`:
✖ Package HDF5Array is required for reading 10X H5 data into
DelayedArray.
ℹ Please install with `BiocManager::install('HDF5Array')`.
Backtrace:
▆
1. └─rliger::read10XH5(...)
2. └─rliger::read10XH5Delay(filename, useNames, featureMakeUniq)
3. └─cli::cli_abort(...)
4. └─rlang::abort(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 2.2.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘reactome.db’
Flavor: r-oldrel-macos-arm64
Version: 2.2.0
Check: installed package size
Result: NOTE
installed size is 11.1Mb
sub-directories of 1Mb or more:
R 2.1Mb
libs 6.9Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64