Last updated on 2026-02-10 05:50:37 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 38.78 | 819.82 | 858.60 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 24.86 | 529.00 | 553.86 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 68.00 | 1353.34 | 1421.34 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 68.00 | 1380.28 | 1448.28 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 39.00 | 589.00 | 628.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 48.13 | 739.48 | 787.61 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 35.58 | 731.94 | 767.52 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 39.00 | 537.00 | 576.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 120.00 | 128.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 28.00 | 957.00 | 985.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 52.00 | 681.00 | 733.00 | ERROR |
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [112s/55s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-10 15:34:37.998058: Isomap START
> test_pipeop_isomap.R: 2026-02-10 15:34:37.9983: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 15:34:38.001246: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 15:34:38.007428: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 15:34:38.019336: Isomap START
> test_pipeop_isomap.R: 2026-02-10 15:34:38.019459: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 15:34:38.021769: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 15:34:38.027731: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 15:34:38.034284: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-10 15:34:38.034439: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 15:34:38.038751: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 15:34:38.053303: embedding
> test_pipeop_isomap.R: 2026-02-10 15:34:38.053664: DONE
> test_pipeop_isomap.R: 2026-02-10 15:34:38.059215: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-10 15:34:38.059333: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 15:34:38.063558: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 15:34:38.078084: embedding
> test_pipeop_isomap.R: 2026-02-10 15:34:38.078452: DONE
> test_pipeop_isomap.R: 2026-02-10 15:34:38.098161: Isomap START
> test_pipeop_isomap.R: 2026-02-10 15:34:38.09828: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 15:34:38.10259: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 15:34:38.13563: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 15:34:38.144155: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-10 15:34:38.144334: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 15:34:38.152905: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 15:34:38.226318: embedding
> test_pipeop_isomap.R: 2026-02-10 15:34:38.227425: DONE
> test_pipeop_isomap.R: 2026-02-10 15:34:38.261443: Isomap START
> test_pipeop_isomap.R: 2026-02-10 15:34:38.261586: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 15:34:38.263949: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 15:34:38.270214: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 15:34:38.278344: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-10 15:34:38.27855: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 15:34:38.290512: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 15:34:38.30547: embedding
> test_pipeop_isomap.R: 2026-02-10 15:34:38.306045: DONE
> test_pipeop_isomap.R: 2026-02-10 15:34:38.336695: Isomap START
> test_pipeop_isomap.R: 2026-02-10 15:34:38.336823: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 15:34:38.338871: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 15:34:38.344234: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 15:34:38.353904: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-10 15:34:38.354056: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 15:34:38.357983: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 15:34:38.372246: embedding
> test_pipeop_isomap.R: 2026-02-10 15:34:38.372646: DONE
> test_pipeop_isomap.R: 2026-02-10 15:34:38.390606: Isomap START
> test_pipeop_isomap.R: 2026-02-10 15:34:38.390737: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 15:34:38.393103: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 15:34:38.39915: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 15:34:38.410682: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-10 15:34:38.410865: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 15:34:38.415447: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 15:34:38.430352: embedding
> test_pipeop_isomap.R: 2026-02-10 15:34:38.430788: DONE
> test_pipeop_isomap.R: 2026-02-10 15:34:38.447845: Isomap START
> test_pipeop_isomap.R: 2026-02-10 15:34:38.447966: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 15:34:38.450168: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 15:34:38.456071: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 15:34:38.468637: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-10 15:34:38.46885: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 15:34:38.473428: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 15:34:38.487709: embedding
> test_pipeop_isomap.R: 2026-02-10 15:34:38.488151: DONE
> test_pipeop_isomap.R: 2026-02-10 15:34:38.507531: Isomap START
> test_pipeop_isomap.R: 2026-02-10 15:34:38.507673: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 15:34:38.509978: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 15:34:38.516014: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 15:34:38.527599: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-10 15:34:38.527791: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 15:34:38.532472: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 15:34:38.547147: embedding
> test_pipeop_isomap.R: 2026-02-10 15:34:38.54759: DONE
> test_pipeop_isomap.R: 2026-02-10 15:34:38.569053: Isomap START
> test_pipeop_isomap.R: 2026-02-10 15:34:38.569194: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 15:34:38.578461: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 15:34:38.584896: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 15:34:38.605176: Isomap START
> test_pipeop_isomap.R: 2026-02-10 15:34:38.605316: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 15:34:38.607571: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 15:34:38.613761: Classical Scaling
> test_pipeop_isomap.R: 2026-02-10 15:34:38.61944: Isomap START
> test_pipeop_isomap.R: 2026-02-10 15:34:38.619567: constructing knn graph
> test_pipeop_isomap.R: 2026-02-10 15:34:38.621835: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-10 15:34:38.627998: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scale.R:6:3',
'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [360s/429s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-09 22:49:20.54115: Isomap START
> test_pipeop_isomap.R: 2026-02-09 22:49:20.541679: constructing knn graph
> test_pipeop_isomap.R: 2026-02-09 22:49:20.552169: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-09 22:49:20.588763: Classical Scaling
> test_pipeop_isomap.R: 2026-02-09 22:49:20.632493: Isomap START
> test_pipeop_isomap.R: 2026-02-09 22:49:20.632781: constructing knn graph
> test_pipeop_isomap.R: 2026-02-09 22:49:20.640674: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-09 22:49:20.65847: Classical Scaling
> test_pipeop_isomap.R: 2026-02-09 22:49:20.687312: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-09 22:49:20.687838: constructing knn graph
> test_pipeop_isomap.R: 2026-02-09 22:49:20.704264: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-09 22:49:20.750184: embedding
> test_pipeop_isomap.R: 2026-02-09 22:49:20.751363: DONE
> test_pipeop_isomap.R: 2026-02-09 22:49:20.774788: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-09 22:49:20.775823: constructing knn graph
> test_pipeop_isomap.R: 2026-02-09 22:49:20.861741: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-09 22:49:20.93474: embedding
> test_pipeop_isomap.R: 2026-02-09 22:49:20.936464: DONE
> test_pipeop_isomap.R: 2026-02-09 22:49:21.024663: Isomap START
> test_pipeop_isomap.R: 2026-02-09 22:49:21.024948: constructing knn graph
> test_pipeop_isomap.R: 2026-02-09 22:49:21.049024: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-09 22:49:21.194893: Classical Scaling
> test_pipeop_isomap.R: 2026-02-09 22:49:21.659481: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-09 22:49:21.660009: constructing knn graph
> test_pipeop_isomap.R: 2026-02-09 22:49:21.695487: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-09 22:49:21.98128: embedding
> test_pipeop_isomap.R: 2026-02-09 22:49:21.987173: DONE
> test_pipeop_isomap.R: 2026-02-09 22:49:22.163504: Isomap START
> test_pipeop_isomap.R: 2026-02-09 22:49:22.163916: constructing knn graph
> test_pipeop_isomap.R: 2026-02-09 22:49:22.1727: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-09 22:49:22.213605: Classical Scaling
> test_pipeop_isomap.R: 2026-02-09 22:49:22.246715: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-09 22:49:22.247145: constructing knn graph
> test_pipeop_isomap.R: 2026-02-09 22:49:22.266256: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-09 22:49:22.430851: embedding
> test_pipeop_isomap.R: 2026-02-09 22:49:22.432036: DONE
> test_pipeop_isomap.R: 2026-02-09 22:49:22.636553: Isomap START
> test_pipeop_isomap.R: 2026-02-09 22:49:22.637297: constructing knn graph
> test_pipeop_isomap.R: 2026-02-09 22:49:22.649614: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-09 22:49:22.674173: Classical Scaling
> test_pipeop_isomap.R: 2026-02-09 22:49:22.796083: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-09 22:49:22.797287: constructing knn graph
> test_pipeop_isomap.R: 2026-02-09 22:49:22.847094: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-09 22:49:22.953415: embedding
> test_pipeop_isomap.R: 2026-02-09 22:49:22.955075: DONE
> test_pipeop_isomap.R: 2026-02-09 22:49:23.074847: Isomap START
> test_pipeop_isomap.R: 2026-02-09 22:49:23.075295: constructing knn graph
> test_pipeop_isomap.R: 2026-02-09 22:49:23.14542: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-09 22:49:23.177366: Classical Scaling
> test_pipeop_isomap.R: 2026-02-09 22:49:23.228586: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-09 22:49:23.229218: constructing knn graph
> test_pipeop_isomap.R: 2026-02-09 22:49:23.262707: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-09 22:49:23.321375: embedding
> test_pipeop_isomap.R: 2026-02-09 22:49:23.322618: DONE
> test_pipeop_isomap.R: 2026-02-09 22:49:23.506865: Isomap START
> test_pipeop_isomap.R: 2026-02-09 22:49:23.507149: constructing knn graph
> test_pipeop_isomap.R: 2026-02-09 22:49:23.5175: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-09 22:49:23.537565: Classical Scaling
> test_pipeop_isomap.R: 2026-02-09 22:49:23.668634: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-09 22:49:23.669309: constructing knn graph
> test_pipeop_isomap.R: 2026-02-09 22:49:23.684064: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-09 22:49:23.725586: embedding
> test_pipeop_isomap.R: 2026-02-09 22:49:23.728726: DONE
> test_pipeop_isomap.R: 2026-02-09 22:49:23.811579: Isomap START
> test_pipeop_isomap.R: 2026-02-09 22:49:23.811932: constructing knn graph
> test_pipeop_isomap.R: 2026-02-09 22:49:23.82728: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-09 22:49:23.857891: Classical Scaling
> test_pipeop_isomap.R: 2026-02-09 22:49:23.921473: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-09 22:49:23.921907: constructing knn graph
> test_pipeop_isomap.R: 2026-02-09 22:49:23.945631: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-09 22:49:24.012045: embedding
> test_pipeop_isomap.R: 2026-02-09 22:49:24.013434: DONE
> test_pipeop_isomap.R: 2026-02-09 22:49:24.115736: Isomap START
> test_pipeop_isomap.R: 2026-02-09 22:49:24.116232: constructing knn graph
> test_pipeop_isomap.R: 2026-02-09 22:49:24.127114: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-09 22:49:24.152298: Classical Scaling
> test_pipeop_isomap.R: 2026-02-09 22:49:24.274397: Isomap START
> test_pipeop_isomap.R: 2026-02-09 22:49:24.274712: constructing knn graph
> test_pipeop_isomap.R: 2026-02-09 22:49:24.286165: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-09 22:49:24.310228: Classical Scaling
> test_pipeop_isomap.R: 2026-02-09 22:49:24.348177: Isomap START
> test_pipeop_isomap.R: 2026-02-09 22:49:24.350335: constructing knn graph
> test_pipeop_isomap.R: 2026-02-09 22:49:24.390949: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-09 22:49:24.4204: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [297s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-04 14:38:37.85581: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:37.856566: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:37.95393: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:37.975298: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:38.048079: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:38.048774: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:38.058092: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:38.077872: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:38.117402: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 14:38:38.118337: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:38.135238: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:38.178244: embedding
> test_pipeop_isomap.R: 2026-02-04 14:38:38.723765: DONE
> test_pipeop_isomap.R: 2026-02-04 14:38:38.759236: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 14:38:38.759695: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:38.772591: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:38.815495: embedding
> test_pipeop_isomap.R: 2026-02-04 14:38:38.817234: DONE
> test_pipeop_isomap.R: 2026-02-04 14:38:38.948538: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:38.949177: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:38.970247: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:39.087581: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:39.148781: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 14:38:39.149726: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:39.207946: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:39.436234: embedding
> test_pipeop_isomap.R: 2026-02-04 14:38:39.44183: DONE
> test_pipeop_isomap.R: 2026-02-04 14:38:39.685675: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:39.686348: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:39.699048: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:39.721448: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:39.773411: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 14:38:39.774336: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:39.79829: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:39.844122: embedding
> test_pipeop_isomap.R: 2026-02-04 14:38:39.845943: DONE
> test_pipeop_isomap.R: 2026-02-04 14:38:40.064832: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:40.065474: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:40.077481: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:40.099369: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:40.174067: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 14:38:40.174959: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:40.197141: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:40.245944: embedding
> test_pipeop_isomap.R: 2026-02-04 14:38:40.247794: DONE
> test_pipeop_isomap.R: 2026-02-04 14:38:40.372332: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:40.372959: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:40.3848: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:40.407012: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:40.503427: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 14:38:40.504425: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:40.529211: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:40.592265: embedding
> test_pipeop_isomap.R: 2026-02-04 14:38:40.600221: DONE
> test_pipeop_isomap.R: 2026-02-04 14:38:40.722223: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:40.722869: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:40.733496: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:40.756135: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:40.834374: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 14:38:40.835035: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:40.854837: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:40.90243: embedding
> test_pipeop_isomap.R: 2026-02-04 14:38:40.903917: DONE
> test_pipeop_isomap.R: 2026-02-04 14:38:41.021478: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:41.022139: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:41.033626: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:41.056134: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:41.126564: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-04 14:38:41.127518: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:41.148435: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:41.19979: embedding
> test_pipeop_isomap.R: 2026-02-04 14:38:41.201246: DONE
> test_pipeop_isomap.R: 2026-02-04 14:38:41.338032: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:41.338671: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:41.349286: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:41.372794: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:41.50814: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:41.508787: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:41.542287: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:41.565956: Classical Scaling
> test_pipeop_isomap.R: 2026-02-04 14:38:41.605449: Isomap START
> test_pipeop_isomap.R: 2026-02-04 14:38:41.606103: constructing knn graph
> test_pipeop_isomap.R: 2026-02-04 14:38:41.618497: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-04 14:38:41.641186: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64