CRAN Package Check Results for Package DeSciDe

Last updated on 2025-07-28 18:51:35 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.1 19.14 172.15 191.29 OK
r-devel-linux-x86_64-debian-gcc 1.0.1 11.84 122.38 134.22 ERROR
r-devel-linux-x86_64-fedora-clang 1.0.1 292.03 OK
r-devel-linux-x86_64-fedora-gcc 1.0.1 302.68 OK
r-devel-windows-x86_64 1.0.1 20.00 161.00 181.00 ERROR
r-patched-linux-x86_64 1.0.1 16.93 164.53 181.46 OK
r-release-linux-x86_64 1.0.1 18.42 161.70 180.12 ERROR
r-release-macos-arm64 1.0.1 96.00 OK
r-release-macos-x86_64 1.0.1 170.00 OK
r-release-windows-x86_64 1.0.1 19.00 156.00 175.00 ERROR
r-oldrel-macos-arm64 1.0.1 101.00 OK
r-oldrel-macos-x86_64 1.0.1 159.00 OK
r-oldrel-windows-x86_64 1.0.1 24.00 206.00 230.00 OK

Check Details

Version: 1.0.1
Check: examples
Result: ERROR Running examples in ‘DeSciDe-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: search_pubmed > ### Title: Search PubMed with Multiple Genes and Terms > ### Aliases: search_pubmed > > ### ** Examples > > genes <- c("TP53", "BRCA1") > terms <- c("cancer", "tumor") > search_results <- search_pubmed(genes, terms, rank_method = "weighted", verbose = FALSE) Error: HTTP failure: 500 <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1//EN" "http://www.w3.org/TR/xhtml11/DTD/xhtml11.dtd"> <html> <head> <title>NCBI/eutils102 - WWW Error 500 Diagnostic</title> <style type="text/css"> h1.error {color: red; font-size: 40pt} div.diags {text-indent: 0.5in } </style> </head> <body> <h1>Server Error</h1> <p>Your request could not be processed due to a problem on our Web server. This could be a transient problem, please try the query again. If it doesn't clear up within a reasonable period of time, e-mail a short description of your query and the diagnostic information shown below to:</p> <p> pubmed@nlm.nih.gov - for problems with PubMed<br/> webadmin@ncbi.nlm.nih.gov - for problems with other services<br/> </p> <p>Thank you for your assistance. We will try to fix the problem as soon as possible. </p> <hr/> <p> Diagnostic Information:</p> <div class="diags">Error: 500</div> <div class="diags">URL: h t t p : / / e x t - h t t p - e u t i l s . l Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.1
Check: examples
Result: ERROR Running examples in 'DeSciDe-Ex.R' failed The error most likely occurred in: > ### Name: search_pubmed > ### Title: Search PubMed with Multiple Genes and Terms > ### Aliases: search_pubmed > > ### ** Examples > > genes <- c("TP53", "BRCA1") > terms <- c("cancer", "tumor") > search_results <- search_pubmed(genes, terms, rank_method = "weighted", verbose = FALSE) Opening and ending tag mismatch: br line 45 and p Opening and ending tag mismatch: br line 45 and section Opening and ending tag mismatch: p line 42 and main Opening and ending tag mismatch: br line 178 and a Opening and ending tag mismatch: a line 178 and p Opening and ending tag mismatch: br line 177 and div Opening and ending tag mismatch: br line 183 and p Opening and ending tag mismatch: br line 182 and div Opening and ending tag mismatch: br line 188 and p Opening and ending tag mismatch: br line 187 and div Opening and ending tag mismatch: p line 187 and div Opening and ending tag mismatch: p line 182 and section Opening and ending tag mismatch: div line 181 and footer Opening and ending tag mismatch: p line 177 and body Opening and ending tag mismatch: div line 176 and html Error: 1: Opening and ending tag mismatch: br line 45 and p 2: Opening and ending tag mismatch: br line 45 and section 3: Opening and ending tag mismatch: p line 42 and main 4: Opening and ending tag mismatch: br line 178 and a 5: Opening and ending tag mismatch: a line 178 and p 6: Opening and ending tag mismatch: br line 177 and div 7: Opening and ending tag mismatch: br line 183 and p 8: Opening and ending tag mismatch: br line 182 and div 9: Opening and ending tag mismatch: br line 188 and p 10: Opening and ending tag mismatch: br line 187 and div 11: Opening and ending tag mismatch: p line 187 and div 12: Opening and ending tag mismatch: p line 182 and section 13: Opening and ending tag mismatch: div line 181 and footer 14: Opening and ending tag mismatch: p line 177 and body 15: Opening and ending tag mismatch: div line 176 and html Execution halted Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 1.0.1
Check: examples
Result: ERROR Running examples in ‘DeSciDe-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: search_pubmed > ### Title: Search PubMed with Multiple Genes and Terms > ### Aliases: search_pubmed > > ### ** Examples > > genes <- c("TP53", "BRCA1") > terms <- c("cancer", "tumor") > search_results <- search_pubmed(genes, terms, rank_method = "weighted", verbose = FALSE) Opening and ending tag mismatch: br line 45 and p Opening and ending tag mismatch: br line 45 and section Opening and ending tag mismatch: p line 42 and main Opening and ending tag mismatch: br line 178 and a Opening and ending tag mismatch: a line 178 and p Opening and ending tag mismatch: br line 177 and div Opening and ending tag mismatch: br line 183 and p Opening and ending tag mismatch: br line 182 and div Opening and ending tag mismatch: br line 188 and p Opening and ending tag mismatch: br line 187 and div Opening and ending tag mismatch: p line 187 and div Opening and ending tag mismatch: p line 182 and section Opening and ending tag mismatch: div line 181 and footer Opening and ending tag mismatch: p line 177 and body Opening and ending tag mismatch: div line 176 and html Premature end of data in tag div line 111 Error: 1: Opening and ending tag mismatch: br line 45 and p 2: Opening and ending tag mismatch: br line 45 and section 3: Opening and ending tag mismatch: p line 42 and main 4: Opening and ending tag mismatch: br line 178 and a 5: Opening and ending tag mismatch: a line 178 and p 6: Opening and ending tag mismatch: br line 177 and div 7: Opening and ending tag mismatch: br line 183 and p 8: Opening and ending tag mismatch: br line 182 and div 9: Opening and ending tag mismatch: br line 188 and p 10: Opening and ending tag mismatch: br line 187 and div 11: Opening and ending tag mismatch: p line 187 and div 12: Opening and ending tag mismatch: p line 182 and section 13: Opening and ending tag mismatch: div line 181 and footer 14: Opening and ending tag mismatch: p line 177 and body 15: Opening and ending tag mismatch: div line 176 and html 16: Premature end of data in tag div line 111 Execution halted Flavor: r-release-linux-x86_64