Last updated on 2025-11-06 17:49:50 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1 | 12.03 | 97.40 | 109.43 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.1 | 7.66 | 63.66 | 71.32 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1 | 85.00 | 100.66 | 185.66 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.1 | 84.00 | 100.37 | 184.37 | ERROR | |
| r-devel-windows-x86_64 | 0.1 | 14.00 | 96.00 | 110.00 | OK | |
| r-patched-linux-x86_64 | 0.1 | 7.95 | 87.54 | 95.49 | ERROR | |
| r-release-linux-x86_64 | 0.1 | 11.34 | 89.37 | 100.71 | OK | |
| r-release-macos-arm64 | 0.1 | 5.00 | 53.00 | 58.00 | OK | |
| r-release-macos-x86_64 | 0.1 | 10.00 | 91.00 | 101.00 | OK | |
| r-release-windows-x86_64 | 0.1 | 13.00 | 94.00 | 107.00 | OK | |
| r-oldrel-macos-arm64 | 0.1 | 5.00 | 46.00 | 51.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1 | 8.00 | 72.00 | 80.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1 | 17.00 | 122.00 | 139.00 | OK |
Version: 0.1
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Xuechan Li <xuechanli0530@gmail.com>’
The Description field contains
<arXiv:1906.07757v2> and Li, Sung and Xie (2021) <arXiv:2103.11085v2>.
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.1
Check: examples
Result: ERROR
Running examples in ‘DYNATE-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Test_Leaf
> ### Title: Test_Leaf The function is used to generate Leaf P-values for
> ### case-control study. Users can input the leaf information through
> ### argument struct_map. If there is not leaf information e.g.
> ### struct_map=NULL, Test_Leaf will automatically construct leaf.
> ### Argument thresh_val specifies the leaf size constructed from the
> ### function. When the argument Gmat_case and Gmat_ctrl is null,
> ### Test_Leaf will automatically generate those matrices.
> ### Aliases: Test_Leaf
>
> ### ** Examples
>
> data("snp_dat")
>
> # Set leaf size M
> M <- 5
>
> #Construct leaves and generate leaf p-value.
> p.leaf <- Test_Leaf(snp_dat=snp_dat,thresh_val=M)
Error in `mutate()`:
ℹ In argument: `num_unique = colsplit(num_comb, ",", c(1:2))[, 1]`.
Caused by error in `levels<-`:
! factor level [112] is duplicated
Backtrace:
▆
1. ├─DYNATE::Test_Leaf(snp_dat = snp_dat, thresh_val = M)
2. │ └─DYNATE:::construct_leafs(snp_dat = snp_dat, thresh_val = thresh_val)
3. │ └─... %>% data.table()
4. ├─data.table::data.table(.)
5. ├─dplyr::mutate_at(., "Sample.Name", as.factor)
6. │ └─dplyr:::manip_at(...)
7. │ └─dplyr:::tbl_at_syms(...)
8. │ └─dplyr:::tbl_at_vars(...)
9. │ └─dplyr::tbl_vars(tbl)
10. │ ├─dplyr:::new_sel_vars(tbl_vars_dispatch(x), group_vars(x))
11. │ │ └─base::structure(...)
12. │ └─dplyr:::tbl_vars_dispatch(x)
13. ├─dplyr::select(...)
14. ├─dplyr::mutate(., L1 = rleid(group2))
15. ├─dplyr::ungroup(.)
16. ├─dplyr::mutate(...)
17. ├─dplyr::group_by(., domainID)
18. ├─dplyr::mutate(., group = cumsum(c(-1L, diff(num_all)) <= 0L))
19. ├─dplyr::mutate(...)
20. ├─dplyr::mutate(...)
21. ├─dplyr:::mutate.data.frame(., num_unique = colsplit(num_comb, ",", c(1:2))[, 1])
22. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
23. │ ├─base::withCallingHandlers(...)
24. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
25. │ └─mask$eval_all_mutate(quo)
26. │ └─dplyr (local) eval()
27. ├─reshape2::colsplit(num_comb, ",", c(1:2))
28. │ ├─base::data.frame(...)
29. │ └─plyr::alply(vars, 2, type.convert, as.is = TRUE)
30. │ └─plyr:::splitter_a(.data, .margins, .expand)
31. │ └─base::lapply(dnames, function(x) factor(x, levels = x))
32. │ └─plyr (local) FUN(X[[i]], ...)
33. │ └─base::factor(x, levels = x)
34. └─base::.handleSimpleError(...)
35. └─dplyr (local) h(simpleError(msg, call))
36. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘vignette.Rmd’ using rmarkdown
Quitting from vignette.Rmd:46-53 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'vignette.Rmd' failed with diagnostics:
ℹ In argument: `num_unique = colsplit(num_comb, ",", c(1:2))[, 1]`.
Caused by error in `levels<-`:
! factor level [112] is duplicated
--- failed re-building ‘vignette.Rmd’
SUMMARY: processing the following file failed:
‘vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 0.1
Check: examples
Result: ERROR
Running examples in ‘DYNATE-Ex.R’ failed
The error most likely occurred in:
> ### Name: Test_Leaf
> ### Title: Test_Leaf The function is used to generate Leaf P-values for
> ### case-control study. Users can input the leaf information through
> ### argument struct_map. If there is not leaf information e.g.
> ### struct_map=NULL, Test_Leaf will automatically construct leaf.
> ### Argument thresh_val specifies the leaf size constructed from the
> ### function. When the argument Gmat_case and Gmat_ctrl is null,
> ### Test_Leaf will automatically generate those matrices.
> ### Aliases: Test_Leaf
>
> ### ** Examples
>
> data("snp_dat")
>
> # Set leaf size M
> M <- 5
>
> #Construct leaves and generate leaf p-value.
> p.leaf <- Test_Leaf(snp_dat=snp_dat,thresh_val=M)
Error in `mutate()`:
ℹ In argument: `num_unique = colsplit(num_comb, ",", c(1:2))[, 1]`.
Caused by error in `levels<-`:
! factor level [112] is duplicated
Backtrace:
▆
1. ├─DYNATE::Test_Leaf(snp_dat = snp_dat, thresh_val = M)
2. │ └─DYNATE:::construct_leafs(snp_dat = snp_dat, thresh_val = thresh_val)
3. │ └─... %>% data.table()
4. ├─data.table::data.table(.)
5. ├─dplyr::mutate_at(., "Sample.Name", as.factor)
6. │ └─dplyr:::manip_at(...)
7. │ └─dplyr:::tbl_at_syms(...)
8. │ └─dplyr:::tbl_at_vars(...)
9. │ └─dplyr::tbl_vars(tbl)
10. │ ├─dplyr:::new_sel_vars(tbl_vars_dispatch(x), group_vars(x))
11. │ │ └─base::structure(...)
12. │ └─dplyr:::tbl_vars_dispatch(x)
13. ├─dplyr::select(...)
14. ├─dplyr::mutate(., L1 = rleid(group2))
15. ├─dplyr::ungroup(.)
16. ├─dplyr::mutate(...)
17. ├─dplyr::group_by(., domainID)
18. ├─dplyr::mutate(., group = cumsum(c(-1L, diff(num_all)) <= 0L))
19. ├─dplyr::mutate(...)
20. ├─dplyr::mutate(...)
21. ├─dplyr:::mutate.data.frame(., num_unique = colsplit(num_comb, ",", c(1:2))[, 1])
22. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
23. │ ├─base::withCallingHandlers(...)
24. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
25. │ └─mask$eval_all_mutate(quo)
26. │ └─dplyr (local) eval()
27. ├─reshape2::colsplit(num_comb, ",", c(1:2))
28. │ ├─base::data.frame(...)
29. │ └─plyr::alply(vars, 2, type.convert, as.is = TRUE)
30. │ └─plyr:::splitter_a(.data, .margins, .expand)
31. │ └─base::lapply(dnames, function(x) factor(x, levels = x))
32. │ └─plyr (local) FUN(X[[i]], ...)
33. │ └─base::factor(x, levels = x)
34. └─base::.handleSimpleError(...)
35. └─dplyr (local) h(simpleError(msg, call))
36. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘vignette.Rmd’ using rmarkdown
Quitting from vignette.Rmd:46-53 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'vignette.Rmd' failed with diagnostics:
ℹ In argument: `num_unique = colsplit(num_comb, ",", c(1:2))[, 1]`.
Caused by error in `levels<-`:
! factor level [112] is duplicated
--- failed re-building ‘vignette.Rmd’
SUMMARY: processing the following file failed:
‘vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc