readyomics: Ready-to-Use Omics Formatting, Analysis, and Visualization
Pipeline
Provides a flexible and streamlined pipeline for formatting, analyzing, and
visualizing omics data, regardless of omics type (e.g. transcriptomics, proteomics,
metabolomics). The package includes tools for shaping input data into analysis-ready
structures, fitting linear or mixed-effect models, extracting key contrasts, and
generating a rich variety of ready-to-use publication-quality plots.
Designed for transparency and reproducibility across a wide range of study designs,
with customizable components for statistical modeling.
| Version: |
0.2.0 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
dplyr, future, future.apply, ggplot2, lme4, lmerTest, methods, permute, rlang, stats, stringr, tidyr, utils, vegan, zCompositions |
| Suggests: |
ape, data.table, ggrepel, ggridges, IHW, imputeLCMD, knitr, phyloseq, progressr, purrr, qvalue, rmarkdown, ropls, scales, testthat (≥ 3.0.0) |
| Published: |
2025-10-20 |
| DOI: |
10.32614/CRAN.package.readyomics |
| Author: |
Laura Martinez-Gili [cre, aut, cph] |
| Maintainer: |
Laura Martinez-Gili <martinez.gili.laura at gmail.com> |
| BugReports: |
https://github.com/lmartinezgili/readyomics/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://lmartinezgili.github.io/readyomics/,
https://github.com/lmartinezgili/readyomics |
| NeedsCompilation: |
no |
| Materials: |
README, NEWS |
| CRAN checks: |
readyomics results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=readyomics
to link to this page.