ed46ad6477e8caa9b0d555ea5001622a *DESCRIPTION
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
85004bebc15f42ad4838fe1593530c10 *NAMESPACE
304ad14a7b73205ac1ba4e088220a5ec *R/Hmsc.R
76790f91ca3956eb08779ef7a9316647 *R/HmscRandomLevel.R
e15597c4b343969958d9a0ad19dc6d54 *R/alignPosterior.R
c264f16eb6d025ba5028be84c44b9d40 *R/biPlot.R
5f66cfa7b1876499eb7549ebf3abb3d4 *R/c.Hmsc.R
1e20f4acd1ec94db59d4634e4557aeee *R/combineParameters.R
a0d8d1011598b2644c1f2ece0fde8468 *R/computeAssociations.R
e75dc7cf4d15d4c8cfc573bf82911afb *R/computeDataParameters.R
7ec08c2b121ca2328968cddd968aa97f *R/computeInitialParameters.R
b66bafdde3853d0e90cb0db9a715d898 *R/computePredictedValues.R
bb8d692e8fdefa682dfd8d64e04ebf6e *R/computePredictedValuesParallel.R
838936ac18723a221c9f8d6e8d47ce85 *R/computePredictor.HmscRandomLevel.R
9bea780731e33edd39139e24079e5e53 *R/computeSAIR.R
75db81f3ac449513d76bfc7d2d5e915d *R/computeVariancePartitioning.R
d2da605489e8e86428987f097cbd35d4 *R/computeWAIC.R
46bd00fb4a223fa0843da7a29abdbff9 *R/constructGradient.R
9378eca314b0116e5fbfec8801649678 *R/constructKnots.R
ecfb103b043bb31c5a6c11e171315a86 *R/convertToCodaObject.r
563f73770199c09cbf0936af48490501 *R/coralCombine.R
96f246d3c6d19e06ddcf3becc4969619 *R/coralGetRareSpeciesPriors.R
3eb060cbc08236545d50798a1d9987b5 *R/coralGetXDataExt.R
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9f58b73234f9dbef7d576c670c993dcf *R/coralPredict.R
95d46cfe1008351464c0d05167ca456f *R/coralPreprocess.R
e54443699f32eb4f4601908612a31909 *R/coralSplitToBatches.R
9572b717929ddc305398f2515ed6dd55 *R/coralTrain.R
dcdd2c357a641ae6d201b25220d3ece2 *R/createPartition.R
ab8c3df16e55097b67d9e0138195050b *R/data.R
08d4b722c687fbbbebbc8f74e3d4eb07 *R/evaluateModelFit.R
0edba8e95a6ce9802d75ba45f40f496a *R/getPostEstimate.R
cbc07e7ca5e4ee909df85d8110a05356 *R/importPosteriorFromHPC.R
09317a2fbcfb06fc43093703a5691392 *R/plotBeta.R
463b2d2c24c5f023acd8a24c3a67b12e *R/plotGamma.R
e0bc37b562798a9e58d09f60f4d3f9cd *R/plotGradient.R
de8b5a044d3dff4a3bedd04dd8bba0e7 *R/plotVariancePartitioning.R
93026853df5ea5ed3eecc208ac94133d *R/poolMcmcChains.R
159d5b2cc88144e72169f153d46e5db6 *R/predict.R
93f0e6b452888494685d0326b98bc46b *R/predictLatentFactor.R
ffc3893c3b22905ccb8404d099b48e48 *R/prepareGradient.R
972dd970368422ce3a24db79c7c190ff *R/print.Hmsc.R
27dc78595358da73ef1e55c346340fcd *R/print.HmscRandomLevel.R
f2d8cadd4652e18707419613f8811bda *R/sampleMcmc.R
dd2aa0af91701b6fab579e29484ee8f8 *R/samplePrior.R
955b6ae87f7875e578629b485b872b16 *R/setPriors.Hmsc.R
c7a17c52b27c62a8af68b6934e1e5f54 *R/setPriors.HmscRandomLevel.R
f07c3d4f152cf07048a52b4bdd42d641 *R/setPriors.R
45ff8085a9d078b8318aacf1bc03d6c2 *R/updateAlpha.R
537dac87cab0a2113669ec996c7861fa *R/updateBetaLambda.R
0182e2a79c928f2741c6e841b68a16b5 *R/updateBetaSel.R
07a3e5d71eeb0f71085051f4004d258b *R/updateEta.R
1eacc765736fcf31f51adfeae09b6b10 *R/updateGamma2.R
62ec6ba7c76b772b4b9f16883ab237ed *R/updateGammaEta.R
8262e0170fcb4460406ec2892cb70d7b *R/updateGammaV.R
0a6158142e4bd9f2e74da5ff47b5d5ce *R/updateInvSigma.R
73c2f29c6a99afb5176141456e668e54 *R/updateLambdaPriors.R
568ed876c29967de897336aa151984f2 *R/updateLatentLoadingOrder.R
b68f208c814595eba1bbbfceec0bc12a *R/updateNf.R
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1c61214b452ba5375aa7fb0522f2ca0e *R/updateZ.R
a7471e032435f3c528f005fed7ca15e0 *R/updatewRRR.R
aeec5d4ccb44f9b04193c1c39609f3c4 *R/updatewRRRPriors.R
724bcd30dacc803b037f76c20a054754 *R/utils.R
170c70bfe7f761ba9f382bd7ed2b6485 *README.md
b52aabe9a2757fc86742763db9dafc9b *build/partial.rdb
4a0f38d8ce64d02e8f512bb535fa7a08 *build/vignette.rds
da6075abda2d4cf088029e6913b5a6ea *data/TD.rda
e1a05b0c3769671e76b75be62c330ddb *inst/NEWS.md
45a82df56cca5b60efdcdce12caa0e53 *inst/README.md
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568ab911d352696da974ced73db4a0fa *inst/doc/vignette_5_performance.pdf
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2e8ef74e4bf466f1bd5b87d89d62220f *man/Hmsc.Rd
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8d1976de6d312ae18c8245f0dccd1f90 *man/TD.Rd
6b8a4d1eb6900c23a685890a609c6916 *man/alignPosterior.Rd
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21c4fa37b639c3a3aba4cfe816da3965 *man/c.Hmsc.Rd
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463628ea6e8af27aa297f5a9e843c793 *man/computeDataParameters.Rd
97bedf6f3eadc2fae10d75f795e01984 *man/computeInitialParameters.Rd
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23c74963ab752b06727d6932ba923f75 *man/computeSAIR.Rd
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ea45186cc4a13c7b357f7a48ffc10a46 *man/computeWAIC.Rd
43dd78a1018bbb4589b2b6620e2c09f2 *man/constructGradient.Rd
ede478d776ada6276e0159099747a4ae *man/constructKnots.Rd
73c32003ddf670207bcdde0bc3bb69a4 *man/convertToCodaObject.Rd
73d44c4764624f2394fcccaa5871850a *man/coralCombine.Rd
895a7f5f089f3f23fb6a9eef2e47df52 *man/coralGetRareSpeciesPriors.Rd
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f3fa4950e1d4e22fae81661920583668 *man/coralPredict.Rd
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813a6bbcfb7cade6f9a3c0103038fd2d *man/coralSplitToBatches.Rd
532d12160d31332d034119d23bf95229 *man/coralTrain.Rd
099282c8f1be3fa8f3f7b3d116361c57 *man/createPartition.Rd
b3aa13dbf8b528058baa85267d26ea70 *man/evaluateModelFit.Rd
489e080591f52449b10fa5f44ab3bc34 *man/getPostEstimate.Rd
72989eadcb00e8fad601cf5a03cf58b6 *man/importPosteriorFromHPC.Rd
7d9c5dd2be3d1f3618c7de852c5fcc21 *man/plotBeta.Rd
8f1392ba92f7b83db7af8cbdc92226ce *man/plotGamma.Rd
0a6e31adc698692fa5ddbf2999a8044c *man/plotGradient.Rd
5f7081254fa741be57459846896af163 *man/plotVariancePartitioning.Rd
a57c50277d45848121bc9f24a0417ead *man/poolMcmcChains.Rd
08a77509c739aaa7ca652cb53fe9afcf *man/predict.Hmsc.Rd
2e1d0b809f5f2b0cc48547832b840fc6 *man/predictLatentFactor.Rd
a7cfe2c85174d6b41b9f3c78fd96260f *man/prepareGradient.Rd
279aa4f2bcb817815af7f69aba97b7e0 *man/sampleMcmc.Rd
518b7aecf3f720cd8a22e50bf6a67ab5 *man/samplePrior.Rd
686564634b52ac43ea7a6e02082f3f26 *man/setPriors.Hmsc.Rd
fd7e8bd0a767b9a48763b1cb185b891a *man/setPriors.HmscRandomLevel.Rd
521784c9ff4ed56cf0c0cea384aa62ef *man/setPriors.Rd
c05b83b278dd348abd72b6461b47911f *tests/Examples/Hmsc-Ex.Rout.save
36e9abe5dd74239636c3358fbb7d3514 *tests/testthat.R
0ea280591ca706d4fc99eeb7b07c0611 *tests/testthat/test-WAIC.R
c01e9ad2dd483fe892ffcf593c407ca4 *tests/testthat/test-initialParameters.R
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2bf29bf9fb741a0db8155413e6d642f9 *tests/testthat/test-setPriors.R
528b6e76ea7bf22963e4977783393992 *tests/testthat/test-setRL.R
c9b3266175f6e30013c5eaa872581531 *vignettes/README
5f3df27513b0aa7fc7472bec874dabae *vignettes/load_libraries.R
eeeae2e7d5f6396e8b4aa88a9eee3093 *vignettes/makedata.R
3e23f6e2b387740902ad813d7dc247aa *vignettes/vignette_1_univariate.Rmd
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1cdc01283b89407b8719f73b6c6fd821 *vignettes/vignette_3_multivariate_high.pdf.asis
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58b8e17c2a93da856c2be27bc34d312b *vignettes/vignette_5_performance.Rmd
e194e2d51a97bb1ea7343f7823df10ff *vignettes/vignette_5_performance.pdf.asis
