| calc_biomass | Calculate Spawning Stock Biomass (SSB) or total biomass | 
| calc_growth | Calculate growth | 
| calc_LFI | Calculate community indicators | 
| calc_LQ | Calculate community indicators | 
| calc_M1 | Calculate background mortality | 
| calc_M1_constRNM | Calculate background mortality | 
| calc_M1_lin | Calculate background mortality | 
| calc_M1_stdRNM | Calculate background mortality | 
| calc_M2 | Calculate predation mortality | 
| calc_mature | Calculate the proportion of mature individuals | 
| calc_phi | Calculate the proportion of individuals that leave each length class for each species each length class each time step. | 
| calc_prefs | Calculate predator-prey size preferences | 
| calc_Q | Calculate gear catchability | 
| calc_ration_growthfac | Calculate growth increments | 
| calc_recruits | Calculate the number of recruits | 
| calc_SSB | Calculate Spawning Stock Biomass (SSB) or total biomass | 
| calc_suit_vect | Combines prey preference and prey suitability | 
| calc_TyL | Calculate community indicators | 
| comb_LeMans_run | Combine two 'LeMans_outputs' objects | 
| get_annual_catch | Get annual catch for each species, catch per unit effort or catch per gear | 
| get_annual_catch-method | Get annual catch for each species, catch per unit effort or catch per gear | 
| get_biomass | Calculate Spawning Stock Biomass (SSB) or total biomass | 
| get_biomass-method | Calculate Spawning Stock Biomass (SSB) or total biomass | 
| get_CPG | Get annual catch for each species, catch per unit effort or catch per gear | 
| get_CPG-method | Get annual catch for each species, catch per unit effort or catch per gear | 
| get_CPUE | Get annual catch for each species, catch per unit effort or catch per gear | 
| get_CPUE-method | Get annual catch for each species, catch per unit effort or catch per gear | 
| get_indicators | Calculate indicators | 
| get_indicators-method | Calculate indicators | 
| get_LFI | Calculate indicators | 
| get_LFI-method | Calculate indicators | 
| get_LQ | Calculate indicators | 
| get_LQ-method | Calculate indicators | 
| get_M1 | Calculate background mortality | 
| get_MML | Calculate indicators | 
| get_MML-method | Calculate indicators | 
| get_N0 | Generate a starting value for N | 
| get_Q | Calculate gear catchability | 
| get_rec_fun | Collate the stock recruitment functions | 
| get_SSB | Calculate Spawning Stock Biomass (SSB) or total biomass | 
| get_SSB-method | Calculate Spawning Stock Biomass (SSB) or total biomass | 
| get_TyL | Calculate indicators | 
| get_TyL-method | Calculate indicators | 
| knife_edge_catch | Calculate gear catchability | 
| LeMansParam | A constructor for the 'LeMansParam' class | 
| LeMansParam-method | A constructor for the 'LeMansParam' class | 
| LeMans_outputs-class | An S4 class representing the outputs of the LeMans model | 
| LeMans_param-class | An S4 class representing the inputs of the LeMans model | 
| logistic_catch | Calculate gear catchability | 
| log_gaussian_catch | Calculate gear catchability | 
| make_rec_fun | Generate the stock recruitment functions | 
| NS_eta | The steepness of the slope of the catchability curve | 
| NS_L50 | The length at 50% of the maximum catchability of the catchability curve | 
| NS_mixed_fish | Gear selectivity data frame | 
| NS_other | Other food for the North Sea | 
| NS_par | North Sea data | 
| NS_tau | North Sea interaction matrix | 
| plot_biomass | Plot Spawning Stock Biomass (SSB) | 
| plot_biomass-method | Plot Spawning Stock Biomass (SSB) | 
| plot_indicators | Plot indicators | 
| plot_indicators-method | Plot indicators | 
| plot_LFI | Plot indicators | 
| plot_LFI-method | Plot indicators | 
| plot_LQ | Plot indicators | 
| plot_LQ-method | Plot indicators | 
| plot_MML | Plot indicators | 
| plot_MML-method | Plot indicators | 
| plot_SSB | Plot Spawning Stock Biomass (SSB) | 
| plot_SSB-method | Plot Spawning Stock Biomass (SSB) | 
| plot_TyL | Plot indicators | 
| plot_TyL-method | Plot indicators | 
| rec_BH | The Beverton-Holt stock recruitment function | 
| rec_const | The constant stock recruitment function | 
| rec_hockey | The hockey-stick stock recruitment function | 
| rec_linear | The density-independent stock recruitment function | 
| rec_Ricker | The Ricker stock recruitment function | 
| run_LeMans | Project the LeMans model | 
| run_LeMans-method | Project the LeMans model |