Calculation of Log2 Counts per Million Cutoff from ERCC Controls
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Documentation for package ‘CpmERCCutoff’ version 1.0.0
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| exp_input | A data frame of expected ERCC1 and ERCC2 ratios |
| getLowLcpmCutoff | Function to empirically determine a log2 CPM cutoff based on ERCC RNA spike-in |
| mta_dta | A data frame containing sample-level ERCC meta data |
| obs_input | A data frame of observed spike in ERCC normalized LCPM data |
| plot.empLCPM | Plot the empirically derived LCPM cutoff |
| print.empLCPM | Print the empirically derived LCPM cutoff results |
| summary.empLCPM | Summarizing the empirically derived LCPM cutoff |