Explain Gene Expression with Boolean Rules of Chromatin States


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Documentation for package ‘ocrRBBR’ version 0.1.0

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ESS Estimate Effective Sample Size from Single-Cell RNA-seq Data
human_atacseq_data Human ATAC-seq data
human_meta_data Human metadata
human_peaks_gr Human peaks GRanges
human_rnaseq_data Human RNA-seq data
link_peaks_to_tss Identifies ATAC-seq peaks surrounding each gene
mouse_atacseq_data Mouse ATAC-seq data
mouse_peaks_gr Mouse peaks GRanges
mouse_rnaseq_data Mouse RNA-seq data
ocrRBBR_bulk Predicts OCR-driven Boolean rules for a gene
ocrRBBR_single_cell Predicts OCR-driven Boolean rules for a gene