Useful Functions for Visualization
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Documentation for package ‘plutor’ version 0.1.0
Help Pages
| assign_colors | assign colors by a column in a tibble, for the convenience to use 'scale_color_identity()' |
| bioletter_colors | colors of nucleotides and amino acids |
| brewer_colors | select colors from 'RColorBrewer' package presets |
| canvas_size | width and height of built-in canvas |
| cm2in | trans inch to cm |
| cm2inch | trans cm to inch |
| cm2pt | trans cm to pt |
| extract_compare | extract the result of 'geom_compare' from a 'ggplot' object |
| geom2trace.GeomCompare | geom2trace.GeomCompare |
| geom2trace.GeomDescribe | geom2trace.GeomDescribe |
| GeomCompare | GeomCompare |
| GeomDescribe | GeomDescribe |
| geom_compare | add p value and fold change on a plot |
| geom_describe | Description values plot |
| gradient_colors | generate gradient colors |
| in2cm | trans inch to cm |
| in2mm | trans inch to mm |
| inch2cm | trans inch to cm |
| inch2mm | trans inch to mm |
| lpt | trans geom line point and theme line point to the real point |
| mini_diamond | Minimal tibble dataset adjusted from diamond |
| mm2in | trans mm to inch |
| mm2inch | trans mm to inch |
| mm2pt | trans mm to pt |
| plot_colors | plot colors |
| pl_init | set size, resolution and default theme |
| pl_save | save plot, support save into a blank canvas |
| pl_size | set repr size and resolution |
| PositionFloatxPL | PositionFloatxPL |
| PositionFloatyPL | PositionFloatyPL |
| position_floatxPL | a new Position object to create float x position |
| position_floatyPL | a new Position object to create float y position |
| ppt | trans geom text or point to the real point |
| pt2cm | trans pt to cm |
| pt2mm | trans pt to mm |
| revert_pos_scale | revert the position scale transformation |
| scale_ele | scale element according to a vector of element scales |
| scale_x_continuous_pl | A variant of 'scale_x_continuous()' to show axis minor breaks |
| scale_x_log10_pl | A variant of 'scale_x_log10()' to show axis minor breaks and better axis labels |
| scale_y_continuous_pl | A variant of 'scale_y_continuous()' to show axis minor breaks |
| scale_y_log10_pl | A variant of 'scale_y_log10()' to show axis minor breaks and better axis labels |
| sci_colors | select colors from 'ggsci' package presets |
| StatCompare | StatCompare |
| StatCountPL | StatCountPL |
| StatDescribe | StatDescribe |
| StatFuncPL | StatFuncPL |
| StatMeanPL | StatMeanPL |
| theme_pl | a new extensible theme |
| theme_pl0 | a blank theme |
| tpt | trans geom text or point to the real point |
| trans_pos_scale | perform the position scale transformation |