* using log directory 'd:/Rcompile/CRANpkg/local/4.0/PCMBase.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'PCMBase/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'PCMBase' version '1.2.12' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'PCMBase' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [56s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [31s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [23s] OK Running 'testthat.R' [23s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [29s] WARNING Error(s) in re-building vignettes: --- re-building 'PCMBase.Rmd' using rmarkdown Failed with error: 'object 'get_aes_var' is not exported by 'namespace:rvcheck'' Quitting from lines 37-53 (PCMBase.Rmd) Error: processing vignette 'PCMBase.Rmd' failed with diagnostics: The ggtree installation did not succeed. The vignette cannot be built. --- failed re-building 'PCMBase.Rmd' --- re-building 'PCMCreateModel.Rmd' using rmarkdown Failed with error: 'object 'get_aes_var' is not exported by 'namespace:rvcheck'' Quitting from lines 37-54 (PCMCreateModel.Rmd) Error: processing vignette 'PCMCreateModel.Rmd' failed with diagnostics: The ggtree installation did not succeed. The vignette cannot be built. --- failed re-building 'PCMCreateModel.Rmd' --- re-building 'PCMParam.Rmd' using rmarkdown --- finished re-building 'PCMParam.Rmd' --- re-building 'PCMTracePruning.Rmd' using rmarkdown Failed with error: 'object 'get_aes_var' is not exported by 'namespace:rvcheck'' Quitting from lines 37-59 (PCMTracePruning.Rmd) Error: processing vignette 'PCMTracePruning.Rmd' failed with diagnostics: The ggtree installation did not succeed. The vignette cannot be built. --- failed re-building 'PCMTracePruning.Rmd' SUMMARY: processing the following files failed: 'PCMBase.Rmd' 'PCMCreateModel.Rmd' 'PCMTracePruning.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... OK * DONE Status: 1 WARNING