| kergp-package | Gaussian Process Laboratory | 
| as.list-method | Coerce a 'covTP' Object into a List | 
| as.list-method | Class '"covComp"' | 
| checkGrad | Check the Gradient Provided in a 'covMan' Object | 
| checkPar | Check Length and Names of a Vector of Values for Parameters or Bounds | 
| checkX | Generic function: Check the Compatibility of a Design Matrix with a Given Covariance Object | 
| checkX-method | Check the Compatibility of a Design with a Given Covariance Object | 
| checkX-method | Virtual Class '"covAll"' | 
| checkX-method | Class '"covComp"' | 
| checkX-method | Class '"covOrd"' | 
| checkX-method | Class '"covQual"' | 
| coef,methods | Extract Coefficients of a Covariance Kernel Object as Vector, List or Matrix | 
| coef-method | Extract Coefficients of a Covariance Kernel Object as Vector, List or Matrix | 
| coef-method | Class '"covANOVA"' | 
| coef-method | Class '"covComp"' | 
| coef-method | Class '"covOrd"' | 
| coef-method | Class '"covQual"' | 
| coef-method | Class '"covRadial"' | 
| coef-method | Class '"covTP"' | 
| coef<- | Generic Function: Replacement of Coefficient Values | 
| coef<--method | Class '"covANOVA"' | 
| coef<--method | Class '"covComp"' | 
| coef<--method | Class '"covMan"' | 
| coef<--method | Class '"covOrd"' | 
| coef<--method | Class '"covQual"' | 
| coef<--method | Class '"covRadial"' | 
| coef<--method | Class '"covTP"' | 
| coef<--method | Class '"covTS"' | 
| coefLower | Extract or Set Lower/Upper Bounds on Coefficients | 
| coefLower-method | Class '"covANOVA"' | 
| coefLower-method | Class '"covComp"' | 
| coefLower-method | Class '"covMan"' | 
| coefLower-method | Class '"covOrd"' | 
| coefLower-method | Class '"covQual"' | 
| coefLower-method | Class '"covRadial"' | 
| coefLower-method | Class '"covTP"' | 
| coefLower-method | Class '"covTS"' | 
| coefLower<- | Extract or Set Lower/Upper Bounds on Coefficients | 
| coefLower<--method | Class '"covANOVA"' | 
| coefLower<--method | Class '"covMan"' | 
| coefLower<--method | Class '"covOrd"' | 
| coefLower<--method | Class '"covQual"' | 
| coefLower<--method | Class '"covRadial"' | 
| coefLower<--method | Class '"covTP"' | 
| coefLower<--method | Class '"covTS"' | 
| coefUpper | Extract or Set Lower/Upper Bounds on Coefficients | 
| coefUpper-method | Class '"covANOVA"' | 
| coefUpper-method | Class '"covComp"' | 
| coefUpper-method | Class '"covMan"' | 
| coefUpper-method | Class '"covOrd"' | 
| coefUpper-method | Class '"covQual"' | 
| coefUpper-method | Class '"covRadial"' | 
| coefUpper-method | Class '"covTP"' | 
| coefUpper-method | Class '"covTS"' | 
| coefUpper<- | Extract or Set Lower/Upper Bounds on Coefficients | 
| coefUpper<--method | Class '"covANOVA"' | 
| coefUpper<--method | Class '"covMan"' | 
| coefUpper<--method | Class '"covOrd"' | 
| coefUpper<--method | Class '"covQual"' | 
| coefUpper<--method | Class '"covRadial"' | 
| coefUpper<--method | Class '"covTP"' | 
| coefUpper<--method | Class '"covTS"' | 
| coerce-method | Class '"covMan"' | 
| coerce-method | Class '"covOrd"' | 
| coerce-method | Class '"covQual"' | 
| contr.helmod | Modified Helmert Contrast Matrix | 
| corLevCompSymm | Correlation Matrix for the Compound Symmetry Structure | 
| corLevDiag | Correlation or Covariance Matrix for a Diagonal Structure | 
| corLevLowRank | Correlation Matrix for a Low-Rank Structure | 
| corLevSymm | Correlation Matrix for a General Symmetric Correlation Structure | 
| covAll-class | Virtual Class '"covAll"' | 
| covANOVA | Creator for the Class '"covANOVA"' | 
| covANOVA-class | Class '"covANOVA"' | 
| covComp | Creator for the Class '"covComp"' for Composite Covariance Kernels | 
| covComp-class | Class '"covComp"' | 
| covMan | Creator Function for 'covMan' Objects | 
| covMan-class | Class '"covMan"' | 
| covMat | Generic Function: Covariance or Cross-Covariance Matrix Between two Sets of Locations | 
| covMat-method | Class '"covANOVA"' | 
| covMat-method | Class '"covComp"' | 
| covMat-method | Covariance Matrix for a Covariance Kernel Object | 
| covMat-method | Class '"covOrd"' | 
| covMat-method | Class '"covQual"' | 
| covMat-method | Class '"covRadial"' | 
| covMat-method | Class '"covTP"' | 
| covOrd | Warping-Based Covariance for an Ordinal Input | 
| covOrd-class | Class '"covOrd"' | 
| covQual-class | Class '"covQual"' | 
| covQualNested | Nested Qualitative Covariance | 
| covQualNested-class | Class '"covQualNested"' | 
| covRadial | Creator for the Class '"covRadial"' | 
| covRadial-class | Class '"covRadial"' | 
| covTP | Creator for the Class '"covTP"' | 
| covTP-class | Class '"covTP"' | 
| covTS | Creator Function for 'covTS' Objects | 
| covTS-class | Class '"covTS"' | 
| gls | Generic Function: Generalized Least Squares Estimation with a Given Covariance Kernel | 
| gls-method | Generalized Least Squares Estimation with a Given Covariance Kernel | 
| gls-methods | Generalized Least Squares Estimation with a Given Covariance Kernel | 
| gp | Gaussian Process Model | 
| hasGrad | Generic Function: Extract slot hasGrad of a Covariance Kernel | 
| hasGrad-method | Generic Function: Extract slot hasGrad of a Covariance Kernel | 
| influence.gp | Diagnostics for a Gaussian Process Model, Based on Leave-One-Out | 
| inputNames | Generic Function: Names of the Inputs of a Covariance Kernel | 
| inputNames-method | Generic Function: Names of the Inputs of a Covariance Kernel | 
| inputNames<- | Generic Function: Names of the Inputs of a Covariance Kernel | 
| inputNames<--method | Class '"covComp"' | 
| inputNames<--method | Generic Function: Names of the Inputs of a Covariance Kernel | 
| k1Exp | Predefined covMan Objects for 1D Kernels | 
| k1Fun1Cos | One-Dimensional Classical Covariance Kernel Functions | 
| k1Fun1Exp | One-Dimensional Classical Covariance Kernel Functions | 
| k1Fun1Gauss | One-Dimensional Classical Covariance Kernel Functions | 
| k1Fun1Matern3_2 | One-Dimensional Classical Covariance Kernel Functions | 
| k1Fun1Matern5_2 | One-Dimensional Classical Covariance Kernel Functions | 
| k1Fun1PowExp | One-Dimensional Classical Covariance Kernel Functions | 
| k1FunExp | One-Dimensional Classical Covariance Kernel Functions | 
| k1FunGauss | One-Dimensional Classical Covariance Kernel Functions | 
| k1FunMatern3_2 | One-Dimensional Classical Covariance Kernel Functions | 
| k1FunMatern5_2 | One-Dimensional Classical Covariance Kernel Functions | 
| k1FunPowExp | One-Dimensional Classical Covariance Kernel Functions | 
| k1Gauss | Predefined covMan Objects for 1D Kernels | 
| k1Matern3_2 | Predefined covMan Objects for 1D Kernels | 
| k1Matern5_2 | Predefined covMan Objects for 1D Kernels | 
| k1PowExp | Predefined covMan Objects for 1D Kernels | 
| kergp | Gaussian Process Laboratory | 
| kernelName | Name of the One-Dimensional Kernel in a Composite Kernel Object | 
| kernelName-method | Class '"covTS"' | 
| kExp | Matérn Kernels | 
| kGauss | Gauss (Squared-Exponential) Kernel | 
| kMatern | Matérn Kernels | 
| kSE | Gauss (Squared-Exponential) Kernel | 
| mle | Generic Function: Maximum Likelihood Estimation of a Gaussian Process Model | 
| mle-method | Maximum Likelihood Estimation of Gaussian Process Model Parameters | 
| mle-methods | Maximum Likelihood Estimation of Gaussian Process Model Parameters | 
| npar | Generic function: Number of Free Parameters in a Covariance Kernel | 
| npar-method | Class '"covANOVA"' | 
| npar-method | Class '"covOrd"' | 
| npar-method | Class '"covQual"' | 
| npar-method | Class '"covRadial"' | 
| npar-method | Class '"covTP"' | 
| npar-method | Number of Parameters for a Covariance Kernel Object | 
| optimMethods | Optimization Methods (or Algorithms) for the 'mle' Method | 
| parMap | Generic Function: Map the Parameters of a Composite Covariance Kernel | 
| parMap-method | Map the Parameters of a Structure on the Inputs and Kernel Parameters | 
| parNamesSymm | Vector of Names for the General 'Symm' Parameterisation | 
| parseCovFormula | Parse a Formula or Expression Describing a Composite Covariance Kernel | 
| plot | Plot for a qualitative input | 
| plot-method | Plot for a qualitative input | 
| plot.covQual | Plot for a qualitative input | 
| plot.gp | Diagnostic Plot for the Validation of a 'gp' Object | 
| plot.simulate.gp | Plot Simulations from a 'gp' Object | 
| predict.gp | Prediction Method for the '"gp"' S3 Class | 
| prinKrige | Principal Kriging Functions | 
| q1CompSymm | Qualitative Correlation or Covariance Kernel with one Input and Compound Symmetric Correlation | 
| q1Diag | Qualitative Correlation or Covariance Kernel with one Input and Diagonal Structure | 
| q1LowRank | Qualitative Correlation or Covariance Kernel with one Input and Low-Rank Correlation | 
| q1Symm | Qualitative Correlation or Covariance Kernel with one Input and General Symmetric Correlation | 
| scores | Generic Function: Scores for a Covariance Kernel Object | 
| scores-method | Class '"covANOVA"' | 
| scores-method | Class '"covComp"' | 
| scores-method | Class '"covMan"' | 
| scores-method | Class '"covOrd"' | 
| scores-method | Class '"covQual"' | 
| scores-method | Class '"covRadial"' | 
| scores-method | Class '"covTP"' | 
| scores-method | Class '"covTS"' | 
| shapeSlot | Extracts the Slots of a Structure | 
| show-method | Class '"covANOVA"' | 
| show-method | Class '"covComp"' | 
| show-method | Class '"covMan"' | 
| show-method | Class '"covOrd"' | 
| show-method | Class '"covQual"' | 
| show-method | Class '"covRadial"' | 
| show-method | Class '"covTP"' | 
| show-method | Class '"covTS"' | 
| simulate-method | Class '"covOrd"' | 
| simulate-method | Class '"covQual"' | 
| simulate-method | Simulation of a 'covAll' Object | 
| simulate.gp | Simulation of Paths from a 'gp' Object | 
| simulPar | Generic function: Draw Random Values for the Parameters of a Covariance Kernel | 
| simulPar-method | Draw Random Values for the Parameters of a Covariance Kernel | 
| symIndices | Vector of Indices Useful for Symmetric or Anti-Symmetric Matrices. | 
| translude | Make Translucent colors | 
| varVec | Generic Function: Variance of Gaussian Process at Specific Locations | 
| varVec-method | Class '"covANOVA"' | 
| varVec-method | Class '"covComp"' | 
| varVec-method | Class '"covOrd"' | 
| varVec-method | Class '"covQual"' | 
| varVec-method | Class '"covRadial"' | 
| varVec-method | Class '"covTP"' | 
| varVec-method | Covariance Matrix for a Covariance Kernel Object | 
| warpFun | Warpings for Ordinal Inputs | 
| warpNorm | Warpings for Ordinal Inputs | 
| warpPower | Warpings for Ordinal Inputs | 
| warpSpline1 | Warpings for Ordinal Inputs | 
| warpSpline2 | Warpings for Ordinal Inputs | 
| warpUnorm | Warpings for Ordinal Inputs |