Predict and Visualize Population-Level Changes in Allele Frequencies in Response to Climate Change

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Documentation for package ‘AlleleShift’ version 1.1

Help Pages

amova.rda Analysis of Molecular Variance (AMOVA) via Redundancy Analysis
count.model Calibration and Prediction Functions for Changes in Allele Frequencies
count.pred Calibration and Prediction Functions for Changes in Allele Frequencies
environmental.novel Shifts of Populations in Environmental Space as Response to Climate Change
freq.ggplot Calibration and Prediction Functions for Changes in Allele Frequencies
freq.model Calibration and Prediction Functions for Changes in Allele Frequencies
freq.pred Calibration and Prediction Functions for Changes in Allele Frequencies
moon.waxer Shifts of Allele Frequencies as Response to Climate Change
pie.baker Shifts of Allele Frequencies as Response to Climate Change
Poptri.1985to2085 Example data sets for Populus trichocarpa.
Poptri.baseline.env Example data sets for Populus trichocarpa.
Poptri.freq.baseline Example data sets for Populus trichocarpa.
Poptri.freq.future Example data sets for Populus trichocarpa.
Poptri.future.env Example data sets for Populus trichocarpa.
Poptri.genind Example data sets for Populus trichocarpa.
Poptri.loc Example data sets for Populus trichocarpa.
population.shift Shifts of Populations in Environmental Space as Response to Climate Change
shift.dot.ggplot Shifts of Allele Frequencies as Response to Climate Change
shift.moon.ggplot Shifts of Allele Frequencies as Response to Climate Change
shift.pie.ggplot Shifts of Allele Frequencies as Response to Climate Change
shift.surf.ggplot Shifts of Allele Frequencies as Response to Climate Change
shift.waffle.ggplot Shifts of Allele Frequencies as Response to Climate Change
VIF.subset Reduce the Climate Data based on Variance Inflation Factor Analysis.
waffle.baker Shifts of Allele Frequencies as Response to Climate Change