Network-Based Interpretation of Changes in Compositional Data

[Up] [Top]

Documentation for package ‘SARP.compo’ version 0.1.5

Help Pages

alpha Estimate the power and the type-I error of the disjoint-subgraphs method
anva1.fpc Utility functions to obtain p-values from tests on individual ratios
anva1vi.fpc Utility functions to obtain p-values from tests on individual ratios
anva_SC.fpc Utility functions to obtain p-values from tests on individual ratios
arbre.Mp Grouping composants by changes in cut-off separation
BpLi_J2 Circadian Genes Expression in Bipolar Disorder Patients
BpLi_J4 Circadian Genes Expression in Bipolar Disorder Patients
calc.rapports Compute all pairwise ratios of a set of variables
choisir.seuil Cut-off selection by simulations
choisir.seuil.equiv Cut-off selection by simulations, in the context of equivalence tests
conversions Convert between matrix and data-frame format
coupures.Mp Finding cut-offs for graph disjonctions
Cq.reference Expression level of candidate reference genes
create.DFp Create p-values data-frame from pairwise tests of all possible ratios of a compositional vector
create.Fp Create and read a file of p-values for all pairwise tests of all possible ratios of a compositional vector
create.graphe Create a graph using a set of p-values from pairwise tests
create.Mp Create p-values matrix from pairwise tests of all possible ratios of a compositional vector
creer.DFp Create p-values data-frame from pairwise tests of all possible ratios of a compositional vector
creer.Fp Create and read a file of p-values for all pairwise tests of all possible ratios of a compositional vector
creer.Mp Create p-values matrix from pairwise tests of all possible ratios of a compositional vector
creer_data.frame Create p-values data-frame from pairwise tests of all possible ratios of a compositional vector
creer_graphe Create a graph using a set of p-values from pairwise tests
creer_matrice Create p-values matrix from pairwise tests of all possible ratios of a compositional vector
DFp.Mp Convert between matrix and data-frame format
distrib.distances Simulate the distribution of maximal minimal distances in a random graph
equiv.fpc Utility function to obtain p-value for equivalence tests on individual ratios
equivalence Utility function to obtain p-value for equivalence tests on individual ratios
estimer.alpha Estimate the power and the type-I error of the disjoint-subgraphs method
estimer.puissance Estimate the power and the type-I error of the disjoint-subgraphs method
fichier Create and read a file of p-values for all pairwise tests of all possible ratios of a compositional vector
GADL1 Gene expression change in bipolar disorder
gadl1 Gene expression change in bipolar disorder
generef Expression level of candidate reference genes
grf.DFp Create a graph using a set of p-values from pairwise tests
grf.Fp Create and read a file of p-values for all pairwise tests of all possible ratios of a compositional vector
grf.Mp Create a graph using a set of p-values from pairwise tests
kw.fpc Utility functions to obtain p-values from tests on individual ratios
modele Create a compositional model for simulations
modele_compo Create a compositional model for simulations
Mp.DFp Convert between matrix and data-frame format
plot.Arbre Grouping composants by changes in cut-off separation
plot.Coupures Finding cut-offs for graph disjonctions
plot.SARPcompo.H0 Cut-off selection by simulations
plot.SARPcompo.modele Create a compositional model for simulations
poteries Composition of Roman poteries
print.SARPcompo.H0 Cut-off selection by simulations
puissance Estimate the power and the type-I error of the disjoint-subgraphs method
rls.fpc Utility functions to obtain p-values from tests on individual ratios
SCH23390 Effect of MDMA and SCH23390 on gene expression
sch23390 Effect of MDMA and SCH23390 on gene expression
student.fpc Utility functions to obtain p-values from tests on individual ratios
tests Utility functions to obtain p-values from tests on individual ratios