Compare Groups, Analytically and Graphically
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Documentation for package ‘cg’ version 1.0-4
Help Pages
A B C D E F G I K M N O P Q R S T U V X Y
| cg-package | Compare Groups, Analytically and Graphically |
-- A --
| aftfit-class | cg package Internal Virtual Classes |
| anorexiaFT | AnorexiaFT Data Set in the cg package |
-- B --
| blockDiag | cg package Internal Utilities |
| boxplot-method | Box Plot Graph of Groups from a cgOneFactorData object |
| boxplot.cgOneFactorData | Box Plot Graph of Groups from a cgOneFactorData object |
| boxplotcensoreddata | cg package Internal Utilities |
| boxplotStamp | cg package Internal Utilities |
-- C --
| canine | Canine Data Set in the cg package |
| canine.listfmt | Canine Data Set in the cg package |
| catCharExpr | cg package Internal Utilities |
| cg | Compare Groups, Analytically and Graphically |
| cg.largest.empty | cg package Internal Utilities |
| cgDevice | cg package Internal Utilities |
| cgInternalClasses | cg package Internal Virtual Classes |
| cgInternalUtilities | cg package Internal Utilities |
| cgLineColors | Color Choice order for Graph Lines |
| cgMessage | cg package Internal Utilities |
| cgOneFactorComparisonsTable | Create a table of comparisons amongst groups with the cgOneFactorFit object |
| cgOneFactorComparisonsTable-class | Create a table of comparisons amongst groups with the cgOneFactorFit object |
| cgOneFactorData | Prepare data object from a data frame for One Factor / One-Way / Unpaired Samples evaluations |
| cgOneFactorData-class | Prepare data object from a data frame for One Factor / One-Way / Unpaired Samples evaluations |
| cgOneFactorDescriptiveTable | Compute Descriptive Summary Statistics of Groups in a cgOneFactorData object |
| cgOneFactorDescriptiveTable-class | Compute Descriptive Summary Statistics of Groups in a cgOneFactorData object |
| cgOneFactorDownweightedTable | Create a table of downweighted observations from a Resistant & Robust fit. |
| cgOneFactorDownweightedTable-class | Create a table of downweighted observations from a Resistant & Robust fit. |
| cgOneFactorFit | Fit models to a cgOneFactorData object |
| cgOneFactorFit-class | Fit models to a cgOneFactorData object |
| cgOneFactorGlobalTest | Perform a global Test of significance with cgOneFactorFit object |
| cgOneFactorGlobalTest-class | Perform a global Test of significance with cgOneFactorFit object |
| cgOneFactorGrpSummaryTable | Create a table of estimated group means and variability with a cgOneFactorFit object. |
| cgOneFactorGrpSummaryTable-class | Create a table of estimated group means and variability with a cgOneFactorFit object. |
| cgOneFactorSampleSizeTable | Estimate Sample Sizes based on a cgOneFactorFit object |
| cgOneFactorSampleSizeTable-class | Estimate Sample Sizes based on a cgOneFactorFit object |
| cgPairedDifferenceComparisonsTable | Create a table of comparisons between two groups with the cgPairedDifferenceFit object |
| cgPairedDifferenceComparisonsTable-class | Create a table of comparisons between two groups with the cgPairedDifferenceFit object |
| cgPairedDifferenceCorrelationTable | Compute Correlations from a cgPairedDifferenceData object |
| cgPairedDifferenceCorrelationTable-class | Compute Correlations from a cgPairedDifferenceData object |
| cgPairedDifferenceData | Prepare data object from a data frame for Paired Samples evaluations |
| cgPairedDifferenceData-class | Prepare data object from a data frame for Paired Samples evaluations |
| cgPairedDifferenceDescriptiveTable | Compute Descriptive Summary Statistics of Groups in a cgPairedDifferenceData object |
| cgPairedDifferenceDescriptiveTable-class | Compute Descriptive Summary Statistics of Groups in a cgPairedDifferenceData object |
| cgPairedDifferenceDownweightedTable | Create a table of downweighted observations from a Resistant & Robust fit. |
| cgPairedDifferenceDownweightedTable-class | Create a table of downweighted observations from a Resistant & Robust fit. |
| cgPairedDifferenceFit | Fit models to a cgPairedDifferenceData object |
| cgPairedDifferenceFit-class | Fit models to a cgPairedDifferenceData object |
| cgPairedDifferenceSampleSizeTable | Estimate Sample Sizes based on a cgPairedDifferenceFit object |
| cgPairedDifferenceSampleSizeTable-class | Estimate Sample Sizes based on a cgPairedDifferenceFit object |
| cgPairedDifferenceVarianceTable | Compute Variances from a cgPairedDifferenceFit object |
| cgPairedDifferenceVarianceTable-class | Compute Variances from a cgPairedDifferenceFit object |
| cgValidity | cg package Validity Checks |
| characterOrExpression-class | cg package Internal Virtual Classes |
| characterOrNULL-class | cg package Internal Virtual Classes |
| chop.matrix | cg package Internal Utilities |
| chopZeroes | cg package Internal Utilities |
| comparisons | Create a table of comparisons amongst groups |
| comparisonsGraph | Graph comparisons specified amongst groups |
| comparisonsgraph | Create an graph of comparisons |
| comparisonsGraph-method | Create an graph of the comparisons in a cgOneFactorComparisonsTable object |
| comparisonsGraph-method | Create an graph of the comparisons in a cgPairedDifferenceComparisonsTable object |
| comparisonsGraph.cgOneFactorComparisonsTable | Create an graph of the comparisons in a cgOneFactorComparisonsTable object |
| comparisonsGraph.cgPairedDifferenceComparisonsTable | Create an graph of the comparisons in a cgPairedDifferenceComparisonsTable object |
| comparisonsGraphStamp | cg package Internal Utilities |
| comparisonsTable | Create a Table of Comparisons amongst Groups |
| comparisonsTable-method | Create a table of comparisons amongst groups with the cgOneFactorFit object |
| comparisonsTable-method | Create a table of comparisons between two groups with the cgPairedDifferenceFit object |
| comparisonsTable.cgOneFactorFit | Create a table of comparisons amongst groups with the cgOneFactorFit object |
| comparisonsTable.cgPairedDifferenceFit | Create a table of comparisons between two groups with the cgPairedDifferenceFit object |
| contrastMatrix | cg package Internal Utilities |
| correlationTable | Compute Correlations |
| correlationTable-method | Compute Correlations from a cgPairedDifferenceData object |
| correlationTable.cgPairedDifferenceData | Compute Correlations from a cgPairedDifferenceData object |
-- D --
| dataframeMatrixOrNULL-class | cg package Internal Virtual Classes |
| dataframeOrNULL-class | cg package Internal Virtual Classes |
| descriptive.censoreddata | cg package Internal Utilities |
| descriptiveTable | Compute Descriptive Summary Statistics of Groups |
| descriptiveTable-method | Compute Descriptive Summary Statistics of Groups in a cgOneFactorData object |
| descriptiveTable-method | Compute Descriptive Summary Statistics of Groups in a cgPairedDifferenceData object |
| descriptiveTable.cgOneFactorData | Compute Descriptive Summary Statistics of Groups in a cgOneFactorData object |
| descriptiveTable.cgPairedDifferenceData | Compute Descriptive Summary Statistics of Groups in a cgPairedDifferenceData object |
| diffGraph | Graph Paired Differences |
| diffGraph-method | Graph Paired Differences from a cgPairedDifferenceData object |
| diffGraph.cgPairedDifferenceData | Graph Paired Differences from a cgPairedDifferenceData object |
| downweightedTable | Create a table of downweighted observations from a Resistant & Robust fit. |
| downweightedTable-method | Create a table of downweighted observations from a Resistant & Robust fit. |
| downweightedTable-method | Create a table of downweighted observations from a Resistant & Robust fit. |
| downweightedTable.cgOneFactorFit | Create a table of downweighted observations from a Resistant & Robust fit. |
| downweightedTable.cgPairedDifferenceFit | Create a table of downweighted observations from a Resistant & Robust fit. |
-- E --
| errorBarGraph | Create an Error Bar graph amongst groups |
| errorbargraph | Create an error bar graph based on pairwise multiple comparisons |
| errorBarGraph-method | Create an Error Bar graph amongst groups in a cgOneFactorFit object |
| errorBarGraph.cgOneFactorFit | Create an Error Bar graph amongst groups in a cgOneFactorFit object |
| errorBarGraphApproximateStamp | cg package Internal Utilities |
| errorBarGraphStamp | cg package Internal Utilities |
-- F --
| factorInSeq | cg package Internal Utilities |
| fit | Fit models to data |
| fit-method | Fit models to a cgOneFactorData object |
| fit-method | Fit models to a cgPairedDifferenceData object |
| fit.cgOneFactorData | Fit models to a cgOneFactorData object |
| fit.cgPairedDifferenceData | Fit models to a cgPairedDifferenceData object |
| fmtDifference | cg package Internal Utilities |
| fmtPercent | cg package Internal Utilities |
| fmtPvalue | cg package Internal Utilities |
| fmtRatio | cg package Internal Utilities |
| fmtRatioToPercent | cg package Internal Utilities |
| fround | cg package Internal Utilities |
| fround.charcens | cg package Internal Utilities |
-- G --
| geoMean | cg package Internal Utilities |
| getDotsArgName | cg package Validity Checks |
| getNumDigits | cg package Internal Utilities |
| globalTest | Perform a global test of significance |
| globalTest-method | Perform a global Test of significance with cgOneFactorFit object |
| globalTest.cgOneFactorFit | Perform a global Test of significance with cgOneFactorFit object |
| gmcsfcens | GM-CSF censored data set in the cg package |
| gmcsfcens.listfmt | GM-CSF censored data set in the cg package |
| gmcsfcens.listfmt1 | GM-CSF censored data set in the cg package |
| gmcsfcens.listfmt2 | GM-CSF censored data set in the cg package |
| gmcsfcens.listfmt3 | GM-CSF censored data set in the cg package |
| graphStampCG | cg package Internal Utilities |
| grpsummary | cg package Internal Utilities |
| grpSummaryTable | Create a table of estimated group means and variability |
| grpSummaryTable-method | Create a table of estimated group means and variability with a cgOneFactorFit object. |
| grpSummaryTable.cgOneFactorFit | Create a table of estimated group means and variability with a cgOneFactorFit object. |
-- I --
| isAllEqual | cg package Internal Utilities |
-- K --
| kmGraph | Graph Distribution Functions of Groups |
| kmGraph-method | Graph Distribution Functions of Groups in a cgOneFactorData object |
| kmGraph.cgOneFactorData | Graph Distribution Functions of Groups in a cgOneFactorData object |
-- M --
| makeCensored | cg package Internal Utilities |
| makeContrastVec | cg package Internal Utilities |
| makeEndptLabel | cg package Internal Utilities |
| makeTickMarks | cg package Internal Utilities |
| makeZeroScore | cg package Internal Utilities |
| minmaxTicks | cg package Internal Utilities |
| multcompDone | cg package Internal Utilities |
| multcompInform | cg package Internal Utilities |
-- N --
| numericOrNULL-class | cg package Internal Virtual Classes |
-- O --
| olsfit-class | cg package Internal Virtual Classes |
-- P --
| pairwisecompsmatrix | cg package Internal Utilities |
| paragraphWrap | cg package Internal Utilities |
| parsePartialName | cg package Validity Checks |
| pctToRatio | cg package Internal Utilities |
| plotGrpNameTicks | cg package Internal Utilities |
| pointGraph | Graph Individual Data Points of Groups |
| pointGraph-method | Graph Individual Data Points in a cgOneFactorData object |
| pointGraph.cgOneFactorData | Graph Individual Data Points in a cgOneFactorData object |
| prepare | Prepare a cg data object from a data frame |
| prepareCGOneFactorData | Prepare data object from a data frame for One Factor / One-Way / Unpaired Samples evaluations |
| prepareCGPairedDifferenceData | Prepare data object from a data frame for Paired Samples evaluations |
| print-method | Print One Factor Comparisons Table object with some format options |
| print-method | Print a One Factor Descriptive Table object with some format options |
| print-method | Print Downweighted Observations Table object with some format options |
| print-method | Print One Factor Model Fit object with some format options |
| print-method | Print One Factor Global F-test object with some format options |
| print-method | Print One Factor Group Summary Table object with some format options |
| print-method | Print a One Factor Sample Size Table object with some format options |
| print-method | Print Paired Difference Comparisons Table object with some format options |
| print-method | Print a Paired Difference Correlation Table object with some format options |
| print-method | Print a Paired Difference Descriptive Table object with some format options |
| print-method | Print Downweighted Observations Table object with some format options |
| print-method | Print One Factor Model Fit object with some format options |
| print-method | Print a Paired Difference Sample Size Table object with some format options |
| print-method | Print a Paired Difference Variance Table object with some format options |
| print.cgOneFactorComparisonsTable | Print One Factor Comparisons Table object with some format options |
| print.cgOneFactorDescriptiveTable | Print a One Factor Descriptive Table object with some format options |
| print.cgOneFactorDownweightedTable | Print Downweighted Observations Table object with some format options |
| print.cgOneFactorFit | Print One Factor Model Fit object with some format options |
| print.cgOneFactorGlobalTest | Print One Factor Global F-test object with some format options |
| print.cgOneFactorGrpSummaryTable | Print One Factor Group Summary Table object with some format options |
| print.cgOneFactorSampleSizeTable | Print a One Factor Sample Size Table object with some format options |
| print.cgPairedDifferenceComparisonsTable | Print Paired Difference Comparisons Table object with some format options |
| print.cgPairedDifferenceCorrelationTable | Print a Paired Difference Correlation Table object with some format options |
| print.cgPairedDifferenceDescriptiveTable | Print a Paired Difference Descriptive Table object with some format options |
| print.cgPairedDifferenceDownweightedTable | Print Downweighted Observations Table object with some format options |
| print.cgPairedDifferenceFit | Print One Factor Model Fit object with some format options |
| print.cgPairedDifferenceSampleSizeTable | Print a Paired Difference Sample Size Table object with some format options |
| print.cgPairedDifferenceVarianceTable | Print a Paired Difference Variance Table object with some format options |
| profileGraph | Graph Profiles of Experimental Units |
| profileGraph-method | Graph Profiles of Experimental Unit Pairs in a cgPairedDifferenceData object |
| profileGraph.cgPairedDifferenceData | Graph Profiles of Experimental Unit Pairs in a cgPairedDifferenceData object |
-- Q --
| qminmin | cg package Internal Utilities |
| qqGraph | Quantile-Quantile Graphs |
| qqGraph-method | Quantile-Quantile (QQ) Graphs of a cgOneFactorFit object |
| qqGraph-method | Quantile-Quantile (QQ) Graphs of a cgPairedDifferenceFit object |
| qqGraph.cgOneFactorFit | Quantile-Quantile (QQ) Graphs of a cgOneFactorFit object |
| qqGraph.cgPairedDifferenceFit | Quantile-Quantile (QQ) Graphs of a cgPairedDifferenceFit object |
-- R --
| rangeExtend | cg package Internal Utilities |
| reportInvalidArg | cg package Validity Checks |
| residualgrptrend.helper | cg package Internal Utilities |
| rmTicks | cg package Internal Utilities |
| rrfit-class | cg package Internal Virtual Classes |
-- S --
| samplesize | cg package Internal Utilities |
| samplesize.default | cg package Internal Utilities |
| samplesizeGraph | Graph Estimated Sample Sizes |
| samplesizegraph | cg package Internal Utilities |
| samplesizeGraph-method | Graph estimated sample sizes from a cgOneFactorSampleSizeTable object |
| samplesizeGraph-method | Graph estimated sample sizes from a cgPairedDifferenceSampleSizeTable object |
| samplesizeGraph.cgOneFactorSampleSizeTable | Graph estimated sample sizes from a cgOneFactorSampleSizeTable object |
| samplesizeGraph.cgPairedDifferenceSampleSizeTable | Graph estimated sample sizes from a cgPairedDifferenceSampleSizeTable object |
| samplesizeTable | Estimate Required Sample Sizes |
| samplesizeTable-method | Estimate Sample Sizes based on a cgOneFactorFit object |
| samplesizeTable-method | Estimate Sample Sizes based on a cgPairedDifferenceFit object |
| samplesizeTable.cgOneFactorFit | Estimate Sample Sizes based on a cgOneFactorFit object |
| samplesizeTable.cgPairedDifferenceFit | Estimate Sample Sizes based on a cgPairedDifferenceFit object |
| scaleVar | cg package Internal Utilities |
| seeHelpFile | cg package Internal Utilities |
| setupAxisTicks | cg package Internal Utilities |
| setupGrpNameTicks | cg package Internal Utilities |
| setupLog10AxisTicks | cg package Internal Utilities |
| show-method | Show a One Factor Comparisons Table object from the cg package |
| show-method | Show a One Factor Descriptive Table object from the cg package |
| show-method | Show a One Factor Downweighted Table object from the cg package |
| show-method | Show a Global Test object from the cg package |
| show-method | Show a One Factor Group Summary Table object from the cg package |
| show-method | Show a One Factor Sample Size Table object from the cg package |
| show-method | Show a Paired Difference Data Comparisons Table object from the cg package |
| show-method | Show a Paired Difference Correlation Table object from the cg package |
| show-method | Show a Paired Difference Descriptive Table object from the cg package |
| show-method | Show a Paired Difference Downweighted Table object from the cg package |
| show-method | Show a Paired Difference Sample Size Table object from the cg package |
| show-method | Show a Paired Difference Variance Table object from the cg package |
| show.cgOneFactorComparisonsTable | Show a One Factor Comparisons Table object from the cg package |
| show.cgOneFactorDescriptiveTable | Show a One Factor Descriptive Table object from the cg package |
| show.cgOneFactorDownweightedTable | Show a One Factor Downweighted Table object from the cg package |
| show.cgOneFactorGlobalTest | Show a Global Test object from the cg package |
| show.cgOneFactorGrpSummaryTable | Show a One Factor Group Summary Table object from the cg package |
| show.cgOneFactorSampleSizeTable | Show a One Factor Sample Size Table object from the cg package |
| show.cgPairedDifferenceComparisonsTable | Show a Paired Difference Data Comparisons Table object from the cg package |
| show.cgPairedDifferenceCorrelationTable | Show a Paired Difference Correlation Table object from the cg package |
| show.cgPairedDifferenceDescriptiveTable | Show a Paired Difference Descriptive Table object from the cg package |
| show.cgPairedDifferenceDownweightedTable | Show a Paired Difference Downweighted Table object from the cg package |
| show.cgPairedDifferenceSampleSizeTable | Show a Paired Difference Sample Size Table object from the cg package |
| show.cgPairedDifferenceVarianceTable | Show a Paired Difference Variance Table object from the cg package |
| showObj | Show raw form of an object from the cg package |
| showObj-method | Show a Fitted Model object from the cg package |
| showObj-method | Show a Fitted Model object from the cg package |
| showObj.cgOneFactorFit | Show a Fitted Model object from the cg package |
| showObj.cgPairedDifferenceFit | Show a Fitted Model object from the cg package |
| stndErr | cg package Internal Utilities |
| stripmiss | cg package Internal Utilities |
| summary-method | Summary display of a One Factor Model Fit object with some format options |
| summary-method | Summary display of a Paired Difference Model Fit object with some format options |
| summary.cgOneFactorFit | Summary display of a One Factor Model Fit object with some format options |
| summary.cgPairedDifferenceFit | Summary display of a Paired Difference Model Fit object with some format options |
-- T --
| trimWhiteSpace | cg package Internal Utilities |
| tryAgain | cg package Internal Utilities |
-- U --
| unpaste | cg package Internal Utilities |
| unwind | cg package Internal Utilities |
| unwrap | cg package Internal Utilities |
| uvfit-class | cg package Internal Virtual Classes |
-- V --
| validAddConstant | cg package Validity Checks |
| validAft | cg package Validity Checks |
| validAlpha | cg package Validity Checks |
| validArgDigits | cg package Validity Checks |
| validArgMatch | cg package Validity Checks |
| validArgModel | cg package Validity Checks |
| validAtomicVec | cg package Validity Checks |
| validBoolean | cg package Validity Checks |
| validCensor | cg package Validity Checks |
| validCGOneFacGroupColDfr | cg package Validity Checks |
| validCGOneFacListedDfr | cg package Validity Checks |
| validCharacter | cg package Validity Checks |
| validComparisonType | cg package Validity Checks |
| validCutoffWt | cg package Validity Checks |
| validDataFormat | cg package Validity Checks |
| validDenDf | cg package Validity Checks |
| validDotsArg | cg package Validity Checks |
| validDotsArgs | cg package Validity Checks |
| validEqualLength | cg package Validity Checks |
| validErrorDf | cg package Validity Checks |
| validEstimates | cg package Validity Checks |
| validFitType | cg package Validity Checks |
| validGrpNames | cg package Validity Checks |
| validList | cg package Validity Checks |
| validN | cg package Validity Checks |
| validNumeric | cg package Validity Checks |
| validNumericOrCensored | cg package Validity Checks |
| validPower | cg package Validity Checks |
| validZeroScore | cg package Validity Checks |
| varianceGraph | Variance Graphs |
| varianceGraph-method | Equal Variance Graphs assessment of cgOneFactorFit object |
| varianceGraph.cgOneFactorFit | Equal Variance Graphs assessment of cgOneFactorFit object |
| varianceTable | Compute Variance Components |
| varianceTable-method | Compute Variances from a cgPairedDifferenceFit object |
| varianceTable.cgPairedDifferenceFit | Compute Variances from a cgPairedDifferenceFit object |
-- X --
| xTicksCex | cg package Internal Utilities |
-- Y --
| yTicksCex | cg package Internal Utilities |