Fatty Acid Metabolic Analysis

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Documentation for package ‘FAMetA’ version 0.1.6

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

addFA	Add missing FA annotations
annotateFA	FA annotation
blankSubstraction	substract blank samples.
changeFArt	Modify rt peak limits of annotated FAs
correctNatAb13C	correct data for natural abundance of 13C using accucor algorithm.
curateFAannotations	Modify FA annotations
dataCorrection	Data correction for natural abundance of 13C and data normalization using internal standards followed by blank substraction.
desaturationAnalysis	Desaturation analysis of fatty acids.
desaturationsdb	Desaturation reactions database.
elongationAnalysis	Elongation analysis of fatty acids longer than 16 carbons.
examplefadata	Example fadata list.
externalNormalization	External normalization using additional measures (i.e. protein levels).
fattyacidsdb	Fatty Acids database.
normalizeIS	Data normalization using internal stardards.
parameters	Parameters for FA metabolic analysis.
plotFA	Plot FA EICs
readfadatafile	read FA data from a csv file.
removeFA	Remove incorrect FA annotations
searchFAisotopes	Search FA isotopes
searchIS	Search internal stardards.
ssexamplefadata	Toy example fadata list.
summarizeResults	Obtain result tables and heatmaps that help interpreting your results.
synthesisAnalysis	De novo synthesis analysis of fatty acids until 16 carbons.