MigConnectivity         MigConnectivity: A package for quantifying
                        migratory connectivity pattern and strength for
                        migratory animals
OVENdata                Ovenbird light-level geolocator and GPS
                        necessary data
abundExamples           Example relative abundance estimates from
                        simulated data
calcMC                  Migratory connectivity strength function
calcMantel              Calculate Mantel correlation (rM) from points
                        and/or distances.
calcNMC                 Calculate NMC_XY, another type of migratory
                        connectivity strength
calcTransition          Calculate psi (transition probabilities between
                        sites in two phases of the annual cycle)
diffMC                  Pairwise differences between two or more
                        independent MC estimates
diffMantel              Pairwise differences between two or more
                        independent Mantel correlation estimates
distFromPos             Distance matrix from position matrix
estMC                   Estimate migratory connectivity
estMantel               Estimate Mantel correlation (rM) from
                        geolocator, GPS, and/or raster data.
estNMC                  Estimate NMC_XY, another type of migratory
                        connectivity strength
estStrength             Estimate MC, migratory connectivity strength
estTransition           Estimate psi (transition probabilities between
                        locations in two phases of the annual cycle)
getCMRexample           Grab (from
                        https://github.com/SMBC-NZP/MigConnectivity)
                        example RMark transition probability estimates
                        obtained from simulated data
getIsoMap               Get Isoscape map getIsoMap
isoAssign               Generate probabilistic isotope assignments
modelCountDataJAGS      Estimates population-level relative abundance
                        from count data
plot.estMigConnectivity
                        Basic plot function for estMigConnectivity
                        objects
plot.intrinsicAssign    Basic plot function for the different isoAssign
                        outputs
projections             Map projections
reverseTransition       Reverse transition probabilities and origin
                        relative abundance
sampleOriginN           Example origin site abundances and relative
                        abundances
sampleOriginPos         Example origin and target site positions and
                        distances on a 2-D plane
samplePsis              Example transition probabilities (psis) between
                        origin and target sites
simCMRData              Simulate capture-mark-reencounter (CMR)
                        migratory movement data
simCountData            Simulates Breeding Bird Survey-style count data
simGLData               Simulate geolocator (GL) migratory movement
                        data
simMove                 Simulates position of birds by individual,
                        season, year, and month.
simProbData             Simulate Dirichlet-based probability table data
simTelemetryData        Simulate telemetry/GPS data
weightAssign            Calculate Weights for Isotope Assignments
                        weightAssign
