Last updated on 2024-05-15 18:56:13 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.2 | 10.51 | 125.20 | 135.71 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.2 | 9.85 | 92.98 | 102.83 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.2 | 174.10 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.2 | 238.44 | OK | |||
| r-devel-windows-x86_64 | 2.0.2 | 13.00 | 112.00 | 125.00 | OK | |
| r-patched-linux-x86_64 | 2.0.2 | 18.76 | 119.27 | 138.03 | OK | |
| r-release-linux-x86_64 | 2.0.2 | 14.96 | 120.74 | 135.70 | OK | |
| r-release-macos-arm64 | 2.0.2 | 49.00 | OK | |||
| r-release-windows-x86_64 | 2.0.2 | 12.00 | 110.00 | 122.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.2 | 59.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.0.2 | 96.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.0.2 | 15.00 | 138.00 | 153.00 | ERROR |
Version: 2.0.2
Check: tests
Result: ERROR
Running 'testthat.R' [6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> Sys.setenv(R_TESTS="")
> library(testthat)
> library(OmicsPLS)
Attaching package: 'OmicsPLS'
The following object is masked from 'package:stats':
loadings
>
> test_check("OmicsPLS")
[1] "Group information not provided, using SO2PLS"
[1] "Group information provided, using GO2PLS"
[1] "Group information not provided, using SO2PLS"
SO2PLS fit
with 1 joint components
and 0 orthogonal components in X
and 0 orthogonal components in Y
Elapsed time: 0.02 sec
[1] "Group information provided, using GO2PLS"
GO2PLS fit
with 1 joint components
and 0 orthogonal components in X
and 0 orthogonal components in Y
Elapsed time: 0 sec
[1] "Group information provided, using GO2PLS"
[1] "Group information provided, using GO2PLS"
O2PLS fit
with 2 joint components
and 0 orthogonal components in X
and 0 orthogonal components in Y
Elapsed time: 0.01 sec
*******************
Elapsed time: 0.02 sec
*******
Minimal 2-CV error is at ax=0 ay=0 a=2
*******
Minimum MSE is 1.943128e-14
*******************
*** Summary of the O2PLS fit ***
- Call: o2m(X = data.frame(a = 1:10, b = 2:11, c = 3:12), Y = data.frame(d = 1:10, e = 2:11, f = 3:12), n = 2, nx = 0, ny = 0)
- Modeled variation
-- Total variation:
in X: 1535
in Y: 1535
-- Joint, Orthogonal and Noise as proportions:
data X data Y
Joint 1 1
Orthogonal 0 0
Noise 0 0
-- Predictable variation in Y-joint part by X-joint part:
Variation in T*B_T relative to U: 1
-- Predictable variation in X-joint part by Y-joint part:
Variation in U*B_U relative to T: 1
-- Variances per component:
Comp 1 Comp 2
X joint 1531.768 3.232
Y joint 1531.768 3.232
- Coefficient in 'U = T B_T + H_U' model:
-- Diagonal elements of B_T =
1 1
*** Summary of the O2PLS fit ***
- Call: o2m(X = diag(3), Y = diag(3), n = 1, nx = 1, ny = 1)
- Modeled variation
-- Total variation:
in X: 3
in Y: 3
-- Joint, Orthogonal and Noise as proportions:
data X data Y
Joint 0.333 0.333
Orthogonal 0.333 0.333
Noise 0.333 0.333
-- Predictable variation in Y-joint part by X-joint part:
Variation in T*B_T relative to U: 1
-- Predictable variation in X-joint part by Y-joint part:
Variation in U*B_U relative to T: 1
-- Variances per component:
Comp 1
X joint 1
Y joint 1
Comp 1
X Orth 1
Comp 1
Y Orth 1
- Coefficient in 'U = T B_T + H_U' model:
-- Diagonal elements of B_T =
1
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 65 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_error.R:24:3'): Normal crossval goes without error ───────────
`crossval_o2m(1:10 %*% t(1:3), 1:10 %*% t(1:3), 1, 0, 0, 2, 2)` threw an error.
Message: creation of server socket failed: port 11418 cannot be opened
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test_error.R:24:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─OmicsPLS::crossval_o2m(...)
7. └─parallel::makePSOCKcluster(nr_cores)
8. └─base::serverSocket(port = port)
── Failure ('test_error.R:25:3'): Normal crossval goes without error ───────────
`crossval_o2m_adjR2(...)` threw an error.
Message: creation of server socket failed: port 11418 cannot be opened
Class: simpleError/error/condition
Backtrace:
▆
1. ├─testthat::expect_error(...) at test_error.R:25:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─OmicsPLS::crossval_o2m_adjR2(...)
7. └─parallel::makePSOCKcluster(nr_cores)
8. └─base::serverSocket(port = port)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 65 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64